View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13970_low_6 (Length: 493)
Name: NF13970_low_6
Description: NF13970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13970_low_6 |
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| [»] scaffold0057 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 138 - 475
Target Start/End: Original strand, 3351759 - 3352096
Alignment:
| Q |
138 |
gagaagtgaagtttgtggaaggaggaatatatgcaaaggtcacattgtcatacaattgtggaaggagggatatatgcaaaggcactagcataccattatt |
237 |
Q |
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| T |
3351759 |
gagaagtgaagtttgtggaaggaggaatatatgcaaaggtcacattgtcatacaattgtggaaggagggatatatgcaaaggcactagcataccattatt |
3351858 |
T |
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| Q |
238 |
ttgttcttatcaaaatcgcacttctaatgtttgaggaagacatgaatttatgcttgacgatatcttaacattttgtgtatatatatcctctcttttcctt |
337 |
Q |
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| T |
3351859 |
ttgttcttatcaaaatcgcacttctaatgtttgagaaagacatgaatttatggttgacgttatcttaacattttgtgtatatatatcctctcttttcctt |
3351958 |
T |
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| Q |
338 |
tatttgctaacacaatatccttccttgcaaagaaataactcttgctcgcctagaccctagtaacttcactaaacctaagatgacaaaatctggttacata |
437 |
Q |
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| T |
3351959 |
tattttctcacacaatatccttccttgcaaagaaataactcttgcttgcctagaccctagtaacttcactaaacctaagatgacaaaatctggttacata |
3352058 |
T |
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| Q |
438 |
gatgctgcatttcgttcatctaggaacaatgaagctta |
475 |
Q |
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| T |
3352059 |
gatgctgcatttcgttcatctaggaacaatgaagctta |
3352096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 55 - 137
Target Start/End: Original strand, 3351612 - 3351694
Alignment:
| Q |
55 |
tatggtgttcaattactagatgtcaacttttttatatttacctacaaaagatttccagcaatatatgtcaaatttctaaggat |
137 |
Q |
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| T |
3351612 |
tatgttgttcaattactagatgtcaacttttttatatttacctacaaaagatttccagcaatatatgtcaaatttctaaggat |
3351694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 414 - 475
Target Start/End: Complemental strand, 42046562 - 42046501
Alignment:
| Q |
414 |
aagatgacaaaatctggttacatagatgctgcatttcgttcatctaggaacaatgaagctta |
475 |
Q |
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| T |
42046562 |
aagatgacaaaatctggttacataagggctgcttttcgttcatctaggcacaatgaagctta |
42046501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 405 - 472
Target Start/End: Complemental strand, 37702 - 37635
Alignment:
| Q |
405 |
actaaacctaagatgacaaaatctggttacatagatgctgcatttcgttcatctaggaacaatgaagc |
472 |
Q |
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| T |
37702 |
actatacctaagatgacgaaatctggttacataaatgctgtatttcgttcatctaggaaaaatgaagc |
37635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 417 - 472
Target Start/End: Complemental strand, 63746 - 63691
Alignment:
| Q |
417 |
atgacaaaatctggttacatagatgctgcatttcgttcatctaggaacaatgaagc |
472 |
Q |
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| T |
63746 |
atgacaaaatctggttacataaatgcagtatttcgttcatctagaaaaaatgaagc |
63691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 417 - 475
Target Start/End: Complemental strand, 42471743 - 42471685
Alignment:
| Q |
417 |
atgacaaaatctggttacatagatgctgcatttcgttcatctaggaacaatgaagctta |
475 |
Q |
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| T |
42471743 |
atgacaaaacctggttacattaatgctgcatttcgttcatctaggaacaacgaagctta |
42471685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 411 - 475
Target Start/End: Original strand, 14452307 - 14452371
Alignment:
| Q |
411 |
cctaagatgacaaaatctggttacatagatgctgcatttcgttcatctaggaacaatgaagctta |
475 |
Q |
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| T |
14452307 |
cctaagatgacaaaatctggttatgtaaatgctgtaattcgttcatctaagtccaatgaagctta |
14452371 |
T |
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