View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13970_low_7 (Length: 475)
Name: NF13970_low_7
Description: NF13970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13970_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Original strand, 45870366 - 45870829
Alignment:
| Q |
1 |
ctgacaagttatagggagatacttgtgtttctttaattattaatttgaattaattgttagctgagtttactaggttgtagtaaagccctatattgtgata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45870366 |
ctgacaagttatagggagatacttgtgtttctttaattattaatttgaattaattgttagctgagtttactaggttgtagtaaagccctatattgtgata |
45870465 |
T |
|
| Q |
101 |
aaactatttttgcattgctaacattttgacgagatttctttttactgcaca--aaaggtgaatatgtaaaaggaaagtagaagggaaatataagcacatg |
198 |
Q |
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| T |
45870466 |
aaactatttttgcattgctaacattttgacgagatttctttttactgcacacaaaaggtgaatatgtaaagggaaagtagaagggaaatataagcacatg |
45870565 |
T |
|
| Q |
199 |
ttaaggtataaatgtttgcttgtttttt-attgattattgattcgttgatgttcaaaaataattttactggtgtttttgtgagtcatacagggttatggt |
297 |
Q |
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||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45870566 |
ttaaggtataaatgtttacttgtttttttattgtttattgattcgttgatgttcaaaaataattttactggtgtttttgtgagtcatacagggttatggt |
45870665 |
T |
|
| Q |
298 |
atttcaaatgtatagtacttggttgttcctttagaaggtaaaggttcacttggtccaacatcttatgtcatttgaagtttatgttacttatttgcggcct |
397 |
Q |
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| T |
45870666 |
atttcaaatgtacagtacttggttgttcctttagaaggtaaaggttcacttggtccaacatcttatgtcatttgaagtttatgttacttatttgcggcct |
45870765 |
T |
|
| Q |
398 |
tttaaagtctctggcatttacttaatgtagaacttatgacaactgaagtgttttatgatctttg |
461 |
Q |
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| T |
45870766 |
tttaaagtctctggcatttacttaatgtagaacttatgacaactgaagtgttttatgatctttg |
45870829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 176
Target Start/End: Complemental strand, 45962469 - 45962357
Alignment:
| Q |
66 |
tttactaggttgtagtaaagccctatattgtgataaaactatttttgcattgctaacattttgacgagatttctttttactgcacaaaaggtg--aatat |
163 |
Q |
| |
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|||||||||||| |||||||||| ||||| ||||| |||||||| |||| ||| ||||||||||||| ||| |||||||| ||||| ||| ||||| |
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| T |
45962469 |
tttactaggttggggtaaagccctggattgtaataaagctattttttcattcttaaaattttgacgagatatctgtttactgcccaaaatgtgaaaatat |
45962370 |
T |
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| Q |
164 |
gtaaaaggaaagt |
176 |
Q |
| |
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||||| ||||||| |
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| T |
45962369 |
gtaaagggaaagt |
45962357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 252 - 459
Target Start/End: Original strand, 40893530 - 40893737
Alignment:
| Q |
252 |
aaaaataattttactggtgtttttgtgagtcatacagggttatggtatttcaaatgtatagtacttggttgtt-cctttagaaggtaaaggttcacttgg |
350 |
Q |
| |
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|||| ||| |||||||||||||||| ||||||||||||||| || |||||||||| ||||| || ||| || ||||||||| |||||||||||||||| |
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| T |
40893530 |
aaaattaactttactggtgtttttgcaagtcatacagggttacggg-tttcaaatgt-tagtatttagtttttgcctttagaaagtaaaggttcacttgg |
40893627 |
T |
|
| Q |
351 |
tccaacatcttatgtcatttgaagtt-tatgttacttatttgcggccttttaaagtctctggcatttacttaatgtagaacttatgacaactgaagtgtt |
449 |
Q |
| |
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|| ||||||||||||||||||||||| |||||||||||||| |||||||||| | ||||| ||||||||||| ||||| || || | ||| ||||||| |
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| T |
40893628 |
tcaaacatcttatgtcatttgaagttagatgttacttatttgtggccttttaaggcctctgccatttacttaacgtagatctcatacctactcaagtgtt |
40893727 |
T |
|
| Q |
450 |
ttatgatctt |
459 |
Q |
| |
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||||||||| |
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|
| T |
40893728 |
atatgatctt |
40893737 |
T |
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Back To:
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