View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13970_low_8 (Length: 456)

Name: NF13970_low_8
Description: NF13970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13970_low_8
NF13970_low_8
[»] chr6 (6 HSPs)
chr6 (1-456)||(31233762-31234214)
chr6 (1-137)||(31243215-31243351)
chr6 (314-390)||(31242729-31242805)
chr6 (190-286)||(31243053-31243144)
chr6 (414-455)||(34519263-34519303)
chr6 (412-456)||(31275778-31275821)
[»] chr7 (7 HSPs)
chr7 (414-456)||(19105136-19105178)
chr7 (414-456)||(27947636-27947678)
chr7 (414-456)||(45948765-45948807)
chr7 (414-456)||(13405262-13405304)
chr7 (414-456)||(23935396-23935438)
chr7 (415-456)||(27935742-27935783)
chr7 (412-456)||(45933719-45933764)
[»] chr1 (7 HSPs)
chr1 (413-456)||(1740776-1740819)
chr1 (414-456)||(34047370-34047412)
chr1 (414-456)||(12002221-12002262)
chr1 (414-456)||(48025389-48025430)
chr1 (412-454)||(48008980-48009024)
chr1 (412-456)||(6332139-6332182)
chr1 (416-456)||(18794676-18794716)
[»] chr8 (11 HSPs)
chr8 (414-456)||(6374388-6374430)
chr8 (416-456)||(17920933-17920972)
chr8 (414-453)||(6116145-6116183)
chr8 (414-456)||(14234355-14234395)
chr8 (414-456)||(7839433-7839474)
chr8 (418-456)||(9812152-9812189)
chr8 (414-456)||(14541882-14541924)
chr8 (414-456)||(35052446-35052487)
chr8 (81-135)||(44028824-44028878)
chr8 (412-456)||(4760695-4760737)
chr8 (412-456)||(5790829-5790872)
[»] chr5 (4 HSPs)
chr5 (414-456)||(6518950-6518992)
chr5 (414-456)||(34446164-34446206)
chr5 (416-456)||(12167718-12167758)
chr5 (414-456)||(42104200-42104242)
[»] chr4 (14 HSPs)
chr4 (396-456)||(27943687-27943743)
chr4 (414-456)||(51733635-51733677)
chr4 (414-456)||(52848195-52848236)
chr4 (416-455)||(18429966-18430005)
chr4 (414-456)||(44572006-44572049)
chr4 (414-456)||(17499856-17499898)
chr4 (414-456)||(25231150-25231191)
chr4 (414-456)||(28734572-28734614)
chr4 (422-456)||(31941537-31941571)
chr4 (414-456)||(54042324-54042365)
chr4 (416-456)||(19930691-19930730)
chr4 (414-454)||(30105893-30105932)
chr4 (414-454)||(32141103-32141143)
chr4 (414-456)||(50203053-50203092)
[»] chr3 (9 HSPs)
chr3 (414-456)||(44648537-44648578)
chr3 (394-456)||(47137922-47137979)
chr3 (394-456)||(27027692-27027750)
chr3 (416-456)||(53200814-53200853)
chr3 (414-456)||(33194165-33194205)
chr3 (414-456)||(30934940-30934981)
chr3 (414-456)||(50038305-50038346)
chr3 (414-452)||(50088454-50088491)
chr3 (412-456)||(49470763-49470806)
[»] chr2 (7 HSPs)
chr2 (412-456)||(441368-441412)
chr2 (414-453)||(1422124-1422163)
chr2 (414-456)||(14697987-14698028)
chr2 (414-456)||(36177951-36177992)
chr2 (422-456)||(45372668-45372702)
chr2 (412-456)||(9366256-9366298)
chr2 (414-456)||(38926583-38926622)
[»] scaffold0565 (1 HSPs)
scaffold0565 (416-456)||(9778-9817)


Alignment Details
Target: chr6 (Bit Score: 430; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Complemental strand, 31234214 - 31233762
Alignment:
Q  1 attctagctggataaagtgcaggaagtttagggttgcggttaaggtgagtcatgggagtaatcaaagcattaggattcaagaaggcatgactgaggcatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  31234214 attctagctggataaagtgcaggaagtttagggttgcggttaaggtgagtcataggagtaatcaaagcattaggattcaagaaggcatgactgaggcatt 31234115  T
Q  101 tgttgtgaaggatcatcgtggagaatgtaagttttattatcataattcataaacttggaattgtataaactataatatctttaacatgccttaatttttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31234114 tgttgtgaaggatcatcgtggagaatgtaagttttattatcataattcataaacttggaattgtataaactataatatctttaacatgccttaatttttt 31234015  T
Q  201 gtgtgtagaatcgtatataattgcaatattgattgggatatatttgatgacaatgactaaatagtacttatttccaactaactttggtctttttaaatta 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||    
T  31234014 gtgtgtagaatcgtatataattgcaatattgattgggatatatttgatgacaatgactaaa---cacttatttccaactaactttggtctttttaaatta 31233918  T
Q  301 gttcttacacccttaaataaattaataagatggtcgccacttttgttgttgtagttttgttattgagcgtgtaaatattgtatatatttattgtatccgt 400  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31233917 gttcttacacccttaaataaattaataagatggtccccacttttgttgttgtagttttgttattgagcgtgtaaatattgtatatatttattgtatccgt 31233818  T
Q  401 tttaaaataattaagtgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31233817 tttaaaataattaagtgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 31233762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 31243351 - 31243215
Alignment:
Q  1 attctagctggataaagtgcaggaagtttagggttgcggttaaggtgagtcatgggagtaatcaaagcattaggattcaagaaggcatgactgaggcatt 100  Q
    ||||||||||||||  ||||||||| ||||||||||| | ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  31243351 attctagctggataccgtgcaggaaatttagggttgcagctaaagtgagtcatgtgagtaatcaaagcattaggattcaagaaggcatgactgaggcatt 31243252  T
Q  101 tgttgtgaaggatcatcgtggagaatgtaagttttat 137  Q
    |||||| ||||||||||||||||||||||||||||||    
T  31243251 tgttgttaaggatcatcgtggagaatgtaagttttat 31243215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 314 - 390
Target Start/End: Complemental strand, 31242805 - 31242729
Alignment:
Q  314 taaataaattaataagatggtcgccacttttgttgttgtagttttgttattgagcgtgtaaatattgtatatattta 390  Q
    |||||| ||||||||||||||| |||||||||||||||||||| |||||||||| ||| ||||||||| ||||||||    
T  31242805 taaatatattaataagatggtccccacttttgttgttgtagttatgttattgagtgtgcaaatattgtttatattta 31242729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 190 - 286
Target Start/End: Complemental strand, 31243144 - 31243053
Alignment:
Q  190 cttaattttttgtgtgtagaatcgtatataattgcaatattgattgggatatatttgatgacaatgactaaatagtacttatttccaactaactttg 286  Q
    |||||||||||||||  || ||  ||||| |||||||||| |||||| ||||||||||||||||||||||||    |||||||||||||||||||||    
T  31243144 cttaattttttgtgt--agcatgatatattattgcaatatagattggaatatatttgatgacaatgactaaa---cacttatttccaactaactttg 31243053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 455
Target Start/End: Complemental strand, 34519303 - 34519263
Alignment:
Q  414 agtgtcgttttagcaaaacaaaaattgttttaaaatgaatgt 455  Q
    |||||||||||||||||| ||||||||||| |||||||||||    
T  34519303 agtgtcgttttagcaaaa-aaaaattgtttcaaaatgaatgt 34519263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 412 - 456
Target Start/End: Complemental strand, 31275821 - 31275778
Alignment:
Q  412 taagtgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    ||||||||| |||||||||| ||||||||||| ||||||||||||    
T  31275821 taagtgtcgctttagcaaaa-aaaaattgtttcaaaatgaatgtc 31275778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 414 - 456
Target Start/End: Complemental strand, 19105178 - 19105136
Alignment:
Q  414 agtgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  19105178 agtgtcgttttagcaaaaaaaaaattgttttaaaatgaatgtc 19105136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 456
Target Start/End: Complemental strand, 27947678 - 27947636
Alignment:
Q  414 agtgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    |||||||||||||||||| ||||||||| ||||||||||||||    
T  27947678 agtgtcgttttagcaaaaaaaaaattgtcttaaaatgaatgtc 27947636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 456
Target Start/End: Complemental strand, 45948807 - 45948765
Alignment:
Q  414 agtgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    |||||||||||||||||| ||||||||||| ||||||||||||    
T  45948807 agtgtcgttttagcaaaaaaaaaattgtttcaaaatgaatgtc 45948765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 414 - 456
Target Start/End: Complemental strand, 13405304 - 13405262
Alignment:
Q  414 agtgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    |||||||||||||  ||| ||||||||||||||||||||||||    
T  13405304 agtgtcgttttagttaaaaaaaaattgttttaaaatgaatgtc 13405262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 414 - 456
Target Start/End: Original strand, 23935396 - 23935438
Alignment:
Q  414 agtgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    ||||||||||||| |||| ||||||||||||||||| ||||||    
T  23935396 agtgtcgttttaggaaaaaaaaaattgttttaaaataaatgtc 23935438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 456
Target Start/End: Original strand, 27935742 - 27935783
Alignment:
Q  415 gtgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    ||||||||||||  ||| ||||||||||||||||||||||||    
T  27935742 gtgtcgttttagttaaaaaaaaattgttttaaaatgaatgtc 27935783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 456
Target Start/End: Complemental strand, 45933764 - 45933719
Alignment:
Q  412 taagtgtcgttttagcaaaacaaaaa-ttgttttaaaatgaatgtc 456  Q
    ||||||||||||||| |||| ||||| |||||||||||||||||||    
T  45933764 taagtgtcgttttagtaaaaaaaaaaattgttttaaaatgaatgtc 45933719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 413 - 456
Target Start/End: Complemental strand, 1740819 - 1740776
Alignment:
Q  413 aagtgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    |||||||||||||| |||| ||||||||||||||||||||||||    
T  1740819 aagtgtcgttttagtaaaaaaaaaattgttttaaaatgaatgtc 1740776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 456
Target Start/End: Complemental strand, 34047412 - 34047370
Alignment:
Q  414 agtgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    |||||||||||||||||| ||||||||||| ||||||||||||    
T  34047412 agtgtcgttttagcaaaaaaaaaattgtttcaaaatgaatgtc 34047370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 414 - 456
Target Start/End: Original strand, 12002221 - 12002262
Alignment:
Q  414 agtgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    |||||||||||||| ||| ||||||||||||||||||||||||    
T  12002221 agtgtcgttttagctaaa-aaaaattgttttaaaatgaatgtc 12002262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 414 - 456
Target Start/End: Complemental strand, 48025430 - 48025389
Alignment:
Q  414 agtgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    |||||||||||||||||| ||||||||||| ||||||||||||    
T  48025430 agtgtcgttttagcaaaa-aaaaattgtttcaaaatgaatgtc 48025389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 454
Target Start/End: Original strand, 48008980 - 48009024
Alignment:
Q  412 taagtgtcgttttagcaaaacaaaa--attgttttaaaatgaatg 454  Q
    |||||||||||||||||||| ||||  ||||||||||||||||||    
T  48008980 taagtgtcgttttagcaaaaaaaaaaaattgttttaaaatgaatg 48009024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 412 - 456
Target Start/End: Original strand, 6332139 - 6332182
Alignment:
Q  412 taagtgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    ||||||| | |||||||||| ||||||||||||||||||||||||    
T  6332139 taagtgttgctttagcaaaa-aaaaattgttttaaaatgaatgtc 6332182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 416 - 456
Target Start/End: Complemental strand, 18794716 - 18794676
Alignment:
Q  416 tgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    |||||||||||||||| ||| ||||||||||||| ||||||    
T  18794716 tgtcgttttagcaaaaaaaatattgttttaaaataaatgtc 18794676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 456
Target Start/End: Original strand, 6374388 - 6374430
Alignment:
Q  414 agtgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    |||||||||||||||||| ||||||||||| ||||||||||||    
T  6374388 agtgtcgttttagcaaaaaaaaaattgtttcaaaatgaatgtc 6374430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 456
Target Start/End: Original strand, 17920933 - 17920972
Alignment:
Q  416 tgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  17920933 tgtcgttttagcaaaa-aaaaattgttttaaaatgaatgtc 17920972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 453
Target Start/End: Complemental strand, 6116183 - 6116145
Alignment:
Q  414 agtgtcgttttagcaaaacaaaaattgttttaaaatgaat 453  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  6116183 agtgtcgttttagcaaaa-aaaaattgttttaaaatgaat 6116145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 456
Target Start/End: Complemental strand, 14234395 - 14234355
Alignment:
Q  414 agtgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    ||||||||||||||||||  |||||||||||||||||||||||    
T  14234395 agtgtcgttttagcaaaa--aaaattgttttaaaatgaatgtc 14234355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 414 - 456
Target Start/End: Original strand, 7839433 - 7839474
Alignment:
Q  414 agtgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    |||||||||||||||||| ||||||||||| ||||||||||||    
T  7839433 agtgtcgttttagcaaaa-aaaaattgtttcaaaatgaatgtc 7839474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 456
Target Start/End: Original strand, 9812152 - 9812189
Alignment:
Q  418 tcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  9812152 tcgttttagcaaaa-aaaaattgttttaaaatgaatgtc 9812189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 414 - 456
Target Start/End: Complemental strand, 14541924 - 14541882
Alignment:
Q  414 agtgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    ||||||| |||||||||| ||||||||||| ||||||||||||    
T  14541924 agtgtcgctttagcaaaaaaaaaattgtttcaaaatgaatgtc 14541882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 414 - 456
Target Start/End: Original strand, 35052446 - 35052487
Alignment:
Q  414 agtgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    ||||||| |||||||||| ||||||||||||||||||||||||    
T  35052446 agtgtcgctttagcaaaa-aaaaattgttttaaaatgaatgtc 35052487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 135
Target Start/End: Original strand, 44028824 - 44028878
Alignment:
Q  81 gaaggcatgactgaggcatttgttgtgaaggatcatcgtggagaatgtaagtttt 135  Q
    ||||||||||| || || |||||||| |||||||| |||||||||||| ||||||    
T  44028824 gaaggcatgacagaagcttttgttgttaaggatcaccgtggagaatgtcagtttt 44028878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 456
Target Start/End: Complemental strand, 4760737 - 4760695
Alignment:
Q  412 taagtgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    |||||||||||||||| |||  |||||||||||||||||||||||    
T  4760737 taagtgtcgttttagccaaa--aaaattgttttaaaatgaatgtc 4760695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 412 - 456
Target Start/End: Complemental strand, 5790872 - 5790829
Alignment:
Q  412 taagtgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    |||||||||||||||  ||| ||||||||||||||||||||||||    
T  5790872 taagtgtcgttttagataaa-aaaaattgttttaaaatgaatgtc 5790829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 456
Target Start/End: Original strand, 6518950 - 6518992
Alignment:
Q  414 agtgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    |||||||||||||||||| ||||||||||| ||||||||||||    
T  6518950 agtgtcgttttagcaaaaaaaaaattgtttcaaaatgaatgtc 6518992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 456
Target Start/End: Complemental strand, 34446206 - 34446164
Alignment:
Q  414 agtgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    |||||||||||||||||| ||||||||||| ||||||||||||    
T  34446206 agtgtcgttttagcaaaaaaaaaattgtttcaaaatgaatgtc 34446164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 456
Target Start/End: Complemental strand, 12167758 - 12167718
Alignment:
Q  416 tgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    ||||| |||||||||| ||||||||||||||||||||||||    
T  12167758 tgtcgctttagcaaaaaaaaaattgttttaaaatgaatgtc 12167718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 414 - 456
Target Start/End: Complemental strand, 42104242 - 42104200
Alignment:
Q  414 agtgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    |||||||||||||| ||| ||||||||||| ||||||||||||    
T  42104242 agtgtcgttttagccaaaaaaaaattgtttcaaaatgaatgtc 42104200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 456
Target Start/End: Complemental strand, 27943743 - 27943687
Alignment:
Q  396 tccgttttaaaataattaagtgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    ||||||||||||||  ||||||||||||||||||||  |||||||||| ||||||||||||    
T  27943743 tccgttttaaaata--taagtgtcgttttagcaaaa--aaaattgtttcaaaatgaatgtc 27943687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 456
Target Start/End: Complemental strand, 51733677 - 51733635
Alignment:
Q  414 agtgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    |||||||||||||||||| ||||||||||| ||||||||||||    
T  51733677 agtgtcgttttagcaaaaaaaaaattgtttcaaaatgaatgtc 51733635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 456
Target Start/End: Complemental strand, 52848236 - 52848195
Alignment:
Q  414 agtgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  52848236 agtgtcgttttagcaaaa-aaaaattgttttaaaatgaatgtc 52848195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 455
Target Start/End: Original strand, 18429966 - 18430005
Alignment:
Q  416 tgtcgttttagcaaaacaaaaattgttttaaaatgaatgt 455  Q
    |||||||||||||||| ||||||| |||||||||||||||    
T  18429966 tgtcgttttagcaaaaaaaaaattattttaaaatgaatgt 18430005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 456
Target Start/End: Complemental strand, 44572049 - 44572006
Alignment:
Q  414 agtgtcgttttagc-aaaacaaaaattgttttaaaatgaatgtc 456  Q
    |||||||||||||| |||| ||||||||||||||||||||||||    
T  44572049 agtgtcgttttagctaaaaaaaaaattgttttaaaatgaatgtc 44572006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 414 - 456
Target Start/End: Complemental strand, 17499898 - 17499856
Alignment:
Q  414 agtgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    ||||||| |||||||||| ||||||||||| ||||||||||||    
T  17499898 agtgtcgatttagcaaaaaaaaaattgtttcaaaatgaatgtc 17499856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 414 - 456
Target Start/End: Original strand, 25231150 - 25231191
Alignment:
Q  414 agtgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    ||||||| |||||||||| ||||||||||||||||||||||||    
T  25231150 agtgtcgctttagcaaaa-aaaaattgttttaaaatgaatgtc 25231191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 414 - 456
Target Start/End: Original strand, 28734572 - 28734614
Alignment:
Q  414 agtgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    |||||||||||||||||| ||||||||||| | ||||||||||    
T  28734572 agtgtcgttttagcaaaaaaaaaattgtttcataatgaatgtc 28734614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 422 - 456
Target Start/End: Original strand, 31941537 - 31941571
Alignment:
Q  422 tttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    |||||||||| ||||||||||||||||||||||||    
T  31941537 tttagcaaaaaaaaaattgttttaaaatgaatgtc 31941571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 414 - 456
Target Start/End: Complemental strand, 54042365 - 54042324
Alignment:
Q  414 agtgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    ||||| |||||||||||| ||||||||||||||||||||||||    
T  54042365 agtgttgttttagcaaaa-aaaaattgttttaaaatgaatgtc 54042324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 416 - 456
Target Start/End: Original strand, 19930691 - 19930730
Alignment:
Q  416 tgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    |||||||||||||||| ||||||||||| ||||||||||||    
T  19930691 tgtcgttttagcaaaa-aaaaattgtttcaaaatgaatgtc 19930730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 454
Target Start/End: Original strand, 30105893 - 30105932
Alignment:
Q  414 agtgtcgttttagcaaaacaaaaattgttttaaaatgaatg 454  Q
    |||||||||||||||||| ||||||||||| ||||||||||    
T  30105893 agtgtcgttttagcaaaa-aaaaattgtttcaaaatgaatg 30105932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 454
Target Start/End: Complemental strand, 32141143 - 32141103
Alignment:
Q  414 agtgtcgttttagcaaaacaaaaattgttttaaaatgaatg 454  Q
    |||||||||||| ||||| ||||||||||| ||||||||||    
T  32141143 agtgtcgttttaacaaaaaaaaaattgtttcaaaatgaatg 32141103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 456
Target Start/End: Original strand, 50203053 - 50203092
Alignment:
Q  414 agtgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    ||||||||||||||||||   ||||||||||||||||||||||    
T  50203053 agtgtcgttttagcaaaa---aaattgttttaaaatgaatgtc 50203092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 456
Target Start/End: Complemental strand, 44648578 - 44648537
Alignment:
Q  414 agtgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  44648578 agtgtcgttttagcaaaa-aaaaattgttttaaaatgaatgtc 44648537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 456
Target Start/End: Original strand, 47137922 - 47137979
Alignment:
Q  394 tatccgttttaaaataattaagtgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    ||||||||||||||||||     |||||||||| |||| ||||||||||||||||||||||||    
T  47137922 tatccgttttaaaataat-----gtcgttttagtaaaaaaaaaattgttttaaaatgaatgtc 47137979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 394 - 456
Target Start/End: Original strand, 27027692 - 27027750
Alignment:
Q  394 tatccgttttaaaataattaagtgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    |||||||||||||||||    ||||||||||||||||| ||||||||||| ||||| ||||||    
T  27027692 tatccgttttaaaataa----gtgtcgttttagcaaaaaaaaaattgtttcaaaattaatgtc 27027750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 456
Target Start/End: Complemental strand, 53200853 - 53200814
Alignment:
Q  416 tgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  53200853 tgtcgttttagcaaaa-aaaaattgttttaaaatgaatgtc 53200814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 456
Target Start/End: Complemental strand, 33194205 - 33194165
Alignment:
Q  414 agtgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    ||||||||||||||||||  |||||||||||||||||||||||    
T  33194205 agtgtcgttttagcaaaa--aaaattgttttaaaatgaatgtc 33194165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 414 - 456
Target Start/End: Complemental strand, 30934981 - 30934940
Alignment:
Q  414 agtgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    |||||||||||||| ||| ||||||||||||||||||||||||    
T  30934981 agtgtcgttttagctaaa-aaaaattgttttaaaatgaatgtc 30934940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 414 - 456
Target Start/End: Complemental strand, 50038346 - 50038305
Alignment:
Q  414 agtgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    ||||||| |||||||||| ||||||||||||||||||||||||    
T  50038346 agtgtcgctttagcaaaa-aaaaattgttttaaaatgaatgtc 50038305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 414 - 452
Target Start/End: Complemental strand, 50088491 - 50088454
Alignment:
Q  414 agtgtcgttttagcaaaacaaaaattgttttaaaatgaa 452  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  50088491 agtgtcgttttagcaaaa-aaaaattgttttaaaatgaa 50088454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 412 - 456
Target Start/End: Original strand, 49470763 - 49470806
Alignment:
Q  412 taagtgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    ||||||||| |||||||||| ||||||||||| ||||||||||||    
T  49470763 taagtgtcgctttagcaaaa-aaaaattgtttcaaaatgaatgtc 49470806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 456
Target Start/End: Complemental strand, 441412 - 441368
Alignment:
Q  412 taagtgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    |||||||||||||||| ||| ||||||||||| ||||||||||||    
T  441412 taagtgtcgttttagccaaaaaaaaattgtttcaaaatgaatgtc 441368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 453
Target Start/End: Original strand, 1422124 - 1422163
Alignment:
Q  414 agtgtcgttttagcaaaacaaaaattgttttaaaatgaat 453  Q
    |||||||||||||||||| ||||||||||| |||||||||    
T  1422124 agtgtcgttttagcaaaaaaaaaattgtttcaaaatgaat 1422163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 414 - 456
Target Start/End: Original strand, 14697987 - 14698028
Alignment:
Q  414 agtgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    |||||||||||||||||| ||||||||||| ||||||||||||    
T  14697987 agtgtcgttttagcaaaa-aaaaattgtttcaaaatgaatgtc 14698028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 414 - 456
Target Start/End: Original strand, 36177951 - 36177992
Alignment:
Q  414 agtgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    |||||||||||||||||| ||||||||||| ||||||||||||    
T  36177951 agtgtcgttttagcaaaa-aaaaattgtttcaaaatgaatgtc 36177992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 422 - 456
Target Start/End: Complemental strand, 45372702 - 45372668
Alignment:
Q  422 tttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    |||||||||| ||||||||||||||||||||||||    
T  45372702 tttagcaaaaaaaaaattgttttaaaatgaatgtc 45372668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 456
Target Start/End: Complemental strand, 9366298 - 9366256
Alignment:
Q  412 taagtgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    ||||||||||||||||||||  |||||||||||||||| ||||||    
T  9366298 taagtgtcgttttagcaaaa--aaaattgttttaaaataaatgtc 9366256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 414 - 456
Target Start/End: Original strand, 38926583 - 38926622
Alignment:
Q  414 agtgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    ||||||||||||||||||   ||||||||||||||||||||||    
T  38926583 agtgtcgttttagcaaaa---aaattgttttaaaatgaatgtc 38926622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 416 - 456
Target Start/End: Complemental strand, 9817 - 9778
Alignment:
Q  416 tgtcgttttagcaaaacaaaaattgttttaaaatgaatgtc 456  Q
    |||||||||||| ||| ||||||||||||||||||||||||    
T  9817 tgtcgttttagccaaa-aaaaattgttttaaaatgaatgtc 9778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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