View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13971_high_2 (Length: 261)
Name: NF13971_high_2
Description: NF13971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13971_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 4636945 - 4637188
Alignment:
| Q |
1 |
ataatcaaaactaacaattcattcccttgctaaccatacatatacaactcttttcctgataaaactaaggcagatcaaatgacattatcactggacttgc |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4636945 |
ataatcaaaactaacaattcattcccttgcaaaccatacatatacaactcttttcctgataaaactaaggcagatcaaatgacattatcactggacttgc |
4637044 |
T |
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| Q |
101 |
caggaaataattgaatgctacagttcaagctaatgctcatccagatcaaccatataactttgaaaataatctaaatgtatgaaaagaaacaatggttgag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4637045 |
caggaaataattgaatgctacagttcaagctaatgctcatccagatcaaccatataaatttgaaaataatctaaatgtatgaaaagaaacaatggttgag |
4637144 |
T |
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| Q |
201 |
tacctttgtgtgtgcttgtgcctctaaaagatacatagacaata |
244 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4637145 |
tacccttgtgtgtgcttgtgcctctaaaagatacatagacaata |
4637188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 11455382 - 11455145
Alignment:
| Q |
1 |
ataatcaaaactaacaattcattcccttgctaaccatacatatacaactcttttcctgataaaactaaggcagatcaaatgacattatcactggacttgc |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
11455382 |
ataatcaaaactaacaattctttcccttgctaaccatacatatataactcttttcctgataaaactcaggcaga---aatgacattatcactggacttgc |
11455286 |
T |
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| Q |
101 |
caggaaataattgaatgctacagttcaagctaatgctcatccagatcaaccatataactttgaaaataatctaaatgtatgaaaagaaacaatggttgag |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11455285 |
caggaaataattgaatgctacagttcaagttaatgctcatccagatcaaccatataactttgaaaataatctaaatgtatgaaaagaaacaatgtttgat |
11455186 |
T |
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| Q |
201 |
tacctttgtgtgtgcttgtgcctctaaaagatacatagaca |
241 |
Q |
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| | ||||||||| |||||||||||||||||||||||||| |
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| T |
11455185 |
tgctcttgtgtgtgtttgtgcctctaaaagatacatagaca |
11455145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 46008434 - 46008194
Alignment:
| Q |
1 |
ataatcaaaactaacaattcattcccttgctaaccatacatatacaactcttttcctgataaaactaaggcagatcaaatgacattatcactggacttgc |
100 |
Q |
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|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
46008434 |
ataatcaaaactaacaattcattcccttgcttaccatacatatacaactcttttcctgataaaactcaggcaga---aatgacattatcactggacttgc |
46008338 |
T |
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| Q |
101 |
caggaaataattgaatgctacagttcaagctaatgctcatccagatcaaccatataactttgaaaataatctaaatgtatgaaaagaaacaatggttgag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46008337 |
caggaaataattgaatgctacagttcaagctaatgctcatccagatcaaccatataactttgaaaataatctaaatgtatgaaaagaaacaatggttgag |
46008238 |
T |
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| Q |
201 |
tacctttgtgtgtgcttgtgcctctaaaagatacatagacaata |
244 |
Q |
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| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
46008237 |
tgctcttgtgtgtgcttgtgcctctaaaagatacatagacaata |
46008194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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