View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13971_high_6 (Length: 240)
Name: NF13971_high_6
Description: NF13971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13971_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 33618724 - 33618945
Alignment:
| Q |
1 |
ttcatgcagccgactcacttagtgggataaggcttgattattgcttttaagctatttaacattttttatttagttccacttgttactaattaaaatactt |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33618724 |
ttcatgcagccaactcacttagtgggataaggcttgattattgcttttaagctatttaacattttttatttagttccacttgttactaattaaaatactt |
33618823 |
T |
|
| Q |
101 |
tgtctcaaaaatgtgaagattgctgtgtccattgtcctggcagtggtgactggtgttgatggtacaaaggacatatccaagggcaatgcaatagtggtat |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33618824 |
tgtctcaacaatgtgaagattgctgtgtccattgtcctggcagtggtgactggtgttgatggtacaaaggacatatccaagggcaatgcaatagtggtat |
33618923 |
T |
|
| Q |
201 |
tggtgctattgtgtttctactc |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
33618924 |
tggtgctattgtgtttctactc |
33618945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 110 - 222
Target Start/End: Original strand, 33609551 - 33609663
Alignment:
| Q |
110 |
aatgtgaagattgctgtgtccattgtcctggcagtggtgactggtgttgatggtacaaaggacatatccaagggcaatgcaatagtggtattggtgctat |
209 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||| |||||||||| |||||||| |||||||||||||| ||||||||| | ||||||||||||| |
|
|
| T |
33609551 |
aatgtgaagattgctgtgtccattgtgctagcagtggtgtctggtgttgacggtacaaacgacatatccaaggggaatgcaatattagtattggtgctat |
33609650 |
T |
|
| Q |
210 |
tgtgtttctactc |
222 |
Q |
| |
|
| ||||| ||||| |
|
|
| T |
33609651 |
tatgtttatactc |
33609663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 114 - 219
Target Start/End: Original strand, 33628040 - 33628145
Alignment:
| Q |
114 |
tgaagattgctgtgtccattgtcctggcagtggtgactggtgttgatggtacaaaggacatatccaagggcaatgcaatagtggtattggtgctattgtg |
213 |
Q |
| |
|
||||| |||| ||||||||||| || |||||||| |||||||||||||||||||| |||||||| ||||||||||||||| |||||||||| ||| |||| |
|
|
| T |
33628040 |
tgaagcttgcggtgtccattgtgctagcagtggtaactggtgttgatggtacaaatgacatatcaaagggcaatgcaatattggtattggtactaatgtg |
33628139 |
T |
|
| Q |
214 |
tttcta |
219 |
Q |
| |
|
|||||| |
|
|
| T |
33628140 |
tttcta |
33628145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 125 - 218
Target Start/End: Original strand, 33623664 - 33623757
Alignment:
| Q |
125 |
gtgtccattgtcctggcagtggtgactggtgttgatggtacaaaggacatatccaagggcaatgcaatagtggtattggtgctattgtgtttct |
218 |
Q |
| |
|
|||| |||||| ||| ||||||| ||||||||||||||||||| |||||||| ||||||||||||||| || ||||||| ||| | ||||||| |
|
|
| T |
33623664 |
gtgttcattgtgctgacagtggttcctggtgttgatggtacaaatgacatatcaaagggcaatgcaatattgatattggtactaatatgtttct |
33623757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 230
Target Start/End: Original strand, 33588990 - 33589072
Alignment:
| Q |
148 |
gactggtgttgatggtacaaaggacatatccaagggcaatgcaatagtggtattggtgctattgtgtttctactccacaggtt |
230 |
Q |
| |
|
|||||||||||||||||||||| |||| || ||||| ||||||| | |||||||||| || | ||||||||| || |||||| |
|
|
| T |
33588990 |
gactggtgttgatggtacaaagcacatgtcaaagggaaatgcaacattggtattggttttactatgtttctacgccgcaggtt |
33589072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 230
Target Start/End: Original strand, 33596162 - 33596244
Alignment:
| Q |
148 |
gactggtgttgatggtacaaaggacatatccaagggcaatgcaatagtggtattggtgctattgtgtttctactccacaggtt |
230 |
Q |
| |
|
|||||||||||||||||||||| |||| || ||||| ||||||| | |||||||||| || | ||||||||| || |||||| |
|
|
| T |
33596162 |
gactggtgttgatggtacaaagcacatgtcaaagggaaatgcaacattggtattggttttactatgtttctacgccgcaggtt |
33596244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 230
Target Start/End: Original strand, 33603293 - 33603375
Alignment:
| Q |
148 |
gactggtgttgatggtacaaaggacatatccaagggcaatgcaatagtggtattggtgctattgtgtttctactccacaggtt |
230 |
Q |
| |
|
|||||||||||||||||||||| |||| || ||||| ||||||| | |||||||||| || | ||||||||| || |||||| |
|
|
| T |
33603293 |
gactggtgttgatggtacaaagcacatgtcaaagggaaatgcaacattggtattggttttactatgtttctacgccgcaggtt |
33603375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University