View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13971_low_2 (Length: 551)

Name: NF13971_low_2
Description: NF13971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13971_low_2
NF13971_low_2
[»] chr5 (20 HSPs)
chr5 (18-198)||(37522848-37523028)
chr5 (18-194)||(37563024-37563200)
chr5 (242-417)||(23616216-23616392)
chr5 (242-417)||(23847613-23847789)
chr5 (242-417)||(5712955-5713132)
chr5 (242-417)||(10862758-10862935)
chr5 (18-115)||(37687658-37687755)
chr5 (449-525)||(37522505-37522581)
chr5 (449-523)||(37562654-37562728)
chr5 (348-417)||(10831192-10831261)
chr5 (348-417)||(10833280-10833349)
chr5 (242-330)||(35467663-35467753)
chr5 (348-417)||(35467822-35467891)
chr5 (242-321)||(10831645-10831726)
chr5 (242-321)||(10830951-10831032)
chr5 (242-321)||(10832815-10832896)
chr5 (18-83)||(37785008-37785073)
chr5 (30-78)||(37792697-37792745)
chr5 (348-415)||(36836749-36836816)
chr5 (434-462)||(5712897-5712925)
[»] chr4 (11 HSPs)
chr4 (242-417)||(15666534-15666711)
chr4 (242-417)||(46109068-46109245)
chr4 (242-417)||(52772350-52772527)
chr4 (247-417)||(52606008-52606179)
chr4 (242-414)||(50390832-50391006)
chr4 (242-417)||(1717235-1717411)
chr4 (325-417)||(46632537-46632629)
chr4 (348-415)||(49228225-49228292)
chr4 (348-415)||(13938871-13938938)
chr4 (367-415)||(34413223-34413271)
chr4 (367-411)||(53189571-53189615)
[»] chr7 (11 HSPs)
chr7 (242-417)||(45110793-45110969)
chr7 (262-417)||(29712863-29713019)
chr7 (242-417)||(47879955-47880132)
chr7 (250-417)||(48384864-48385033)
chr7 (242-417)||(34592944-34593121)
chr7 (245-321)||(45487188-45487266)
chr7 (348-415)||(28164914-28164981)
chr7 (351-414)||(6568169-6568232)
chr7 (383-415)||(29670446-29670478)
chr7 (383-415)||(29670495-29670527)
chr7 (434-462)||(47880149-47880177)
[»] chr6 (5 HSPs)
chr6 (242-417)||(13853864-13854040)
chr6 (242-394)||(5384694-5384848)
chr6 (242-353)||(1251764-1251877)
chr6 (348-417)||(1251934-1252003)
chr6 (360-414)||(647912-647966)
[»] chr1 (14 HSPs)
chr1 (242-417)||(38929097-38929272)
chr1 (242-417)||(9614566-9614743)
chr1 (242-417)||(51561999-51562176)
chr1 (247-417)||(3800386-3800558)
chr1 (242-353)||(23860638-23860751)
chr1 (348-417)||(23860808-23860877)
chr1 (348-414)||(36834645-36834711)
chr1 (348-417)||(26246150-26246219)
chr1 (348-417)||(7860963-7861032)
chr1 (348-417)||(47779043-47779112)
chr1 (242-321)||(7860722-7860803)
chr1 (242-321)||(47778828-47778909)
chr1 (242-321)||(26246353-26246435)
chr1 (242-321)||(36834845-36834926)
[»] chr3 (10 HSPs)
chr3 (242-417)||(41331810-41331987)
chr3 (242-417)||(49615796-49615972)
chr3 (242-417)||(34022217-34022393)
chr3 (303-411)||(41993921-41994029)
chr3 (348-417)||(51058103-51058172)
chr3 (348-417)||(43020708-43020777)
chr3 (242-321)||(51057888-51057969)
chr3 (242-321)||(43020493-43020574)
chr3 (348-415)||(43424117-43424184)
chr3 (434-462)||(41332004-41332032)
[»] chr8 (9 HSPs)
chr8 (242-417)||(16847853-16848030)
chr8 (249-417)||(29410982-29411151)
chr8 (242-321)||(27594100-27594181)
chr8 (348-417)||(27592566-27592635)
chr8 (348-414)||(21356057-21356123)
chr8 (351-414)||(111772-111835)
chr8 (368-415)||(1236279-1236326)
chr8 (348-411)||(15552326-15552389)
chr8 (368-415)||(31498610-31498657)
[»] chr2 (4 HSPs)
chr2 (242-334)||(8740857-8740950)
chr2 (348-417)||(8740723-8740792)
chr2 (348-401)||(32742210-32742263)
chr2 (351-414)||(13789226-13789289)


Alignment Details
Target: chr5 (Bit Score: 173; Significance: 9e-93; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 37523028 - 37522848
Alignment:
18 cctccaacacaacaacttttgcacgtaaagatgcaatctcctcctagtttaatacaaagatgaaataaaataagaaaatgaaagttaatgaagttaaagt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
37523028 cctccaacacaacaacttttgcacgtaaagatgcaatctcctcctaatttaatacaaagatgaaataaaataagaaaatgaaagttaatgaagttaaagt 37522929  T
118 accagcaatgtcattgagatatgttggggaaagggacaatttaaagaggtcatatcataattctaatcatatactccctcc 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
37522928 accagcaatgtcattgagatatgttggggaaagggacaatttaaagagatcatatcataattctaatcatatactccctcc 37522848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 37563200 - 37563024
Alignment:
18 cctccaacacaacaacttttgcacgtaaagatgcaatctcctcctagtttaatacaaagatgaaataaaataagaaaatgaaagttaatgaagttaaagt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
37563200 cctccaacacaacaacttttgcacgtaaagatgcaatctcctcctaatttaatacaaagatgaaataaaataagaaaatgaaagttaatgaagttaaagt 37563101  T
118 accagcaatgtcattgagatatgttggggaaagggacaatttaaagaggtcatatcataattctaatcatatactcc 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
37563100 accagcaatgtcattgagatatgttggggaaagggacaatttaaagagataatatcataattctaatcatatactcc 37563024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 242 - 417
Target Start/End: Original strand, 23616216 - 23616392
Alignment:
242 tgaaatgattacattgaagacatgttaaaaaagtacaactttccaattttgcccttgtcat-ttttactaataattaatgaaagtgacttttgaattcat 340  Q
    |||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||| ||||| ||||    
23616216 tgaattgattacattgaagtcatgttaaaaaagtacaacttttcaattttgcccttgtcatgttttagtaataattaatgaaagtgactcttgaactcat 23616315  T
341 ggagatggggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 417  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
23616316 ggagatggggtaaaattggaatagtagcatttattaggttgtttttactatactttttcttacatttgagaccacaa 23616392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 242 - 417
Target Start/End: Original strand, 23847613 - 23847789
Alignment:
242 tgaaatgattacattgaagacatgttaaaaaagtacaactttccaattttgcccttgtcat-ttttactaataattaatgaaagtgacttttgaattcat 340  Q
    |||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||| ||||| ||||    
23847613 tgaattgattacattgaagtcatgttaaaaaagtacaacttttcaattttgcccttgtcatgttttagtaataattaatgaaagtgactcttgaactcat 23847712  T
341 ggagatggggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 417  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
23847713 ggagatggggtaaaattggaatagtagcatttattaggttgtttttactatactttttcttacatttgagaccacaa 23847789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 242 - 417
Target Start/End: Original strand, 5712955 - 5713132
Alignment:
242 tgaaatgattacattgaagacatgttaaaaaa-gtacaactttccaattttgcccttgtcat-ttttactaataattaatgaaagtgacttttgaattca 339  Q
    |||| |||||||||||||  |||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||| ||||||||||||||| |||    
5712955 tgaattgattacattgaaatcatgttaaaaaatgtacaactttctaattttgcccttgtcatgttttagtaataattaataaaagtgacttttgaactca 5713054  T
340 tggagatggggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 417  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
5713055 tggagatagggtaaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 5713132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 242 - 417
Target Start/End: Original strand, 10862758 - 10862935
Alignment:
242 tgaaatgattacattgaagacatgttaaaaaa-gtacaactttccaattttgcccttgtcat-ttttactaataattaatgaaagtgacttttgaattca 339  Q
    |||| |||||||||||||  |||| ||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||    
10862758 tgaattgattacattgaaatcatgataaaaaatgtacaactttccaattttgcccttgtcatgttttagtaataattaatgaaagtgacttttgaactca 10862857  T
340 tggagatggggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 417  Q
    ||||||| || ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
10862858 tggagataggataacattggaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 10862935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 37687755 - 37687658
Alignment:
18 cctccaacacaacaacttttgcacgtaaagatgcaatctcctcctagtttaatacaaagatgaaataaaataagaaaatgaaagttaatgaagttaaa 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
37687755 cctccaacacaacaacttttgcacgtaaagatgcaatctcctcctaatttaatacaaagatgaaataaaataagaaaatgaaagttaatgaagttaaa 37687658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 449 - 525
Target Start/End: Complemental strand, 37522581 - 37522505
Alignment:
449 cggagggagtacatataaagccacccattcttctacttgccttcaaacttgcacgtggaactcaaaaatataaaaga 525  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
37522581 cggagggagtacatataaagccacccattcttctacttgccttaaaacttgcacgtggaactcaaaaatataaaaga 37522505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 449 - 523
Target Start/End: Complemental strand, 37562728 - 37562654
Alignment:
449 cggagggagtacatataaagccacccattcttctacttgccttcaaacttgcacgtggaactcaaaaatataaaa 523  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
37562728 cggagggagtacatataaagccacccattcttctacttgccttaaaacttgcacgtggaactcaaaaatataaaa 37562654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 348 - 417
Target Start/End: Complemental strand, 10831261 - 10831192
Alignment:
348 gggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 417  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
10831261 gggtaaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 10831192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 348 - 417
Target Start/End: Original strand, 10833280 - 10833349
Alignment:
348 gggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 417  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
10833280 gggtaaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 10833349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 35467663 - 35467753
Alignment:
242 tgaaatgattacattgaagacatgttaaaaaa-gtacaactttccaattttgcccttgtcat-ttttactaataattaatgaaagtgactt 330  Q
    |||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
35467663 tgaattgattacattgaagtcatgttaaaaaatgtacaactttccaattttgcccttgtcatgttttagtaataattaatgaaagtgactt 35467753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 348 - 417
Target Start/End: Original strand, 35467822 - 35467891
Alignment:
348 gggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 417  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
35467822 gggtaaaattggaatagtagcatttaataggttgcttttactatactttttcttacatttgagaccacaa 35467891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 242 - 321
Target Start/End: Complemental strand, 10831726 - 10831645
Alignment:
242 tgaaatgattacattgaagacatgttaaaaaa-gtacaactttccaattttgcccttgtcat-ttttactaataattaatga 321  Q
    |||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||    
10831726 tgaattgattacattgaagtcatgttaaaaaatgtacaactttccaattttgcccttgtcatgttttagtaataattaatga 10831645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 242 - 321
Target Start/End: Original strand, 10830951 - 10831032
Alignment:
242 tgaaatgattacattgaagacatgttaaaaaa-gtacaactttccaattttgcccttgtcat-ttttactaataattaatga 321  Q
    |||| ||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||    
10830951 tgaattgattacattgaagttatgttaaaaaatgtacaactttccaattttgcccttgtcatgttttagtaataattaatga 10831032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 242 - 321
Target Start/End: Original strand, 10832815 - 10832896
Alignment:
242 tgaaatgattacattgaagacatgttaaaaaa-gtacaactttccaattttgcccttgtcat-ttttactaataattaatga 321  Q
    |||| |||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||| ||||| |||||||||||||    
10832815 tgaattgattacattgaagtcatgttaaaaaatgtacaactttccaattttgtccttgtcatgttttagtaataattaatga 10832896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 37785073 - 37785008
Alignment:
18 cctccaacacaacaacttttgcacgtaaagatgcaatctcctcctagtttaatacaaagatgaaat 83  Q
    |||||||| |||||| |||||  |||||||||||| |||||||||| ||||||| || ||||||||    
37785073 cctccaacgcaacaatttttgtgcgtaaagatgcattctcctcctaatttaataaaaggatgaaat 37785008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 37792745 - 37792697
Alignment:
30 caacttttgcacgtaaagatgcaatctcctcctagtttaatacaaagat 78  Q
    ||||||||| ||||| ||||||||||||| |||| ||||||||||||||    
37792745 caacttttgtacgtagagatgcaatctccccctaatttaatacaaagat 37792697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 415
Target Start/End: Complemental strand, 36836816 - 36836749
Alignment:
348 gggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccac 415  Q
    ||||||| ||| ||| || ||||||| ||||||  ||||||||||| |||||||| ||||||||||||    
36836816 gggtaaacttggaattgtggcatttaataggttcattttactatacattttcttatatttgagaccac 36836749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 434 - 462
Target Start/End: Complemental strand, 5712925 - 5712897
Alignment:
434 ccctacatttgagaccggagggagtacat 462  Q
    |||||||||||||||||||||||||||||    
5712925 ccctacatttgagaccggagggagtacat 5712897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 142; Significance: 3e-74; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 242 - 417
Target Start/End: Original strand, 15666534 - 15666711
Alignment:
242 tgaaatgattacattgaagacatgttaaaaaa-gtacaactttccaattttgcccttgtcat-ttttactaataattaatgaaagtgacttttgaattca 339  Q
    |||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||    
15666534 tgaattgattacattgaagtcatgttaaaaaatgtacaactttccaattttgcccttgtcatgttttagtaataattaatgaaagtgacttttgaactca 15666633  T
340 tggagatggggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 417  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
15666634 tggagatagggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 15666711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 242 - 417
Target Start/End: Complemental strand, 46109245 - 46109068
Alignment:
242 tgaaatgattacattgaagacatgttaaaaaa-gtacaactttccaattttgcccttgtcat-ttttactaataattaatgaaagtgacttttgaattca 339  Q
    |||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||    
46109245 tgaattgattacattgaagtcatgttaaaaaatgtacaactttccaattttgcccttgtcatgttttagtaataattaatgaaagtgacttttgaactca 46109146  T
340 tggagatggggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 417  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
46109145 tggagatagggtaaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 46109068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 242 - 417
Target Start/End: Complemental strand, 52772527 - 52772350
Alignment:
242 tgaaatgattacattgaagacatgttaaaaaa-gtacaactttccaattttgcccttgtcat-ttttactaataattaatgaaagtgacttttgaattca 339  Q
    |||| |||||||||||||| |||||||||||| |||||||||| |||||||| ||||||||| ||||| ||||||||||||||||||||||||||| |||    
52772527 tgaattgattacattgaagtcatgttaaaaaatgtacaacttttcaattttgtccttgtcatgttttagtaataattaatgaaagtgacttttgaactca 52772428  T
340 tggagatggggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 417  Q
    | ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
52772427 tagagatagggtaaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 52772350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 247 - 417
Target Start/End: Original strand, 52606008 - 52606179
Alignment:
247 tgattacattgaagacatgttaaaaaagtacaactttccaattttgcccttgtcat-ttttactaataattaatgaaagtgacttttgaattcatggaga 345  Q
    |||||||||||||| |||||||||||||||||| |||  ||||||||||||||||| ||||| ||||||||||||||||| ||| ||||| |||||||||    
52606008 tgattacattgaagtcatgttaaaaaagtacaattttttaattttgcccttgtcatgttttagtaataattaatgaaagtaactcttgaactcatggaga 52606107  T
346 tggggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 417  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
52606108 tggggtaaaattggaatagtagcatttattaggttgtttttactatactttttcttacatttgagaccacaa 52606179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 242 - 414
Target Start/End: Complemental strand, 50391006 - 50390832
Alignment:
242 tgaaatgattacattgaagacatgttaaaaaa-gtacaactttccaattttgcccttgtcat-ttttactaataattaatgaaagtgacttttgaattca 339  Q
    |||| |||||||||||||  |||||||||||| ||| |||||||||||||||||||||| || ||||| ||||||||||| ||||||||||||||| |||    
50391006 tgaattgattacattgaaatcatgttaaaaaatgtataactttccaattttgcccttgttatgttttagtaataattaataaaagtgacttttgaactca 50390907  T
340 tggagatggggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagacca 414  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
50390906 tggagatagggtaaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttgagacca 50390832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 242 - 417
Target Start/End: Complemental strand, 1717411 - 1717235
Alignment:
242 tgaaatgattacattgaagacatgttaaaaaa-gtacaactttccaattttgcccttgtcat-ttttactaataattaatgaaagtgacttttgaattca 339  Q
    |||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||    
1717411 tgaattgattacattgaagtcatgttaaaaaatgtacaactttccaattttgcccttgtcatgttttagtaataattaatgaa-gtgacttttgaattca 1717313  T
340 tggagatggggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 417  Q
    ||||| | || ||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
1717312 tggaggtaggataacattggaatagtagcatttattaggttgattttactatactttttcttacatttgagaccacaa 1717235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 325 - 417
Target Start/End: Complemental strand, 46632629 - 46632537
Alignment:
325 tgacttttgaattcatggagatggggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 417  Q
    ||||||||||| |||||||| | |||||| |||| |||||||||||||||||||||| |||||||||| ||||| |||||||||| |||||||    
46632629 tgacttttgaactcatggaggtagggtaacattggaatagtagcatttattaggttgtttttactatatttttttttacatttgaaaccacaa 46632537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 348 - 415
Target Start/End: Complemental strand, 49228292 - 49228225
Alignment:
348 gggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccac 415  Q
    ||||||||||| ||| || ||||||| ||||||  |||||||||||||||||||| ||||||||||||    
49228292 gggtaaaattggaattgtggcatttaataggttcattttactatactttttcttatatttgagaccac 49228225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 348 - 415
Target Start/End: Original strand, 13938871 - 13938938
Alignment:
348 gggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccac 415  Q
    ||||||| |||  ||||| ||||||| ||||||  |||||||||||||||||||| ||||||||||||    
13938871 gggtaaacttgggatagtggcatttaataggttcattttactatactttttcttatatttgagaccac 13938938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 367 - 415
Target Start/End: Complemental strand, 34413271 - 34413223
Alignment:
367 gcatttattaggttgcttttactatactttttcttacatttgagaccac 415  Q
    ||||||| ||||||  |||||||||| ||||||||| ||||||||||||    
34413271 gcatttaataggttcattttactatattttttcttatatttgagaccac 34413223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 367 - 411
Target Start/End: Original strand, 53189571 - 53189615
Alignment:
367 gcatttattaggttgcttttactatactttttcttacatttgaga 411  Q
    ||||||| ||||||  |||||||||||||||||||| ||||||||    
53189571 gcatttaataggttcattttactatactttttcttatatttgaga 53189615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 141; Significance: 1e-73; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 242 - 417
Target Start/End: Original strand, 45110793 - 45110969
Alignment:
242 tgaaatgattacattgaagacatgttaaaaaagtacaactttccaattttgcccttgtcat-ttttactaataattaatgaaagtgacttttgaattcat 340  Q
    |||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||| ||||| ||||    
45110793 tgaattgattacattgaagtcatgttaaaaaagtacaacttttcaattttgcccttgtcatgttttagtaataattaatgaaagtgactcttgaactcat 45110892  T
341 ggagatggggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 417  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
45110893 ggagatggggtaaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 45110969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 262 - 417
Target Start/End: Complemental strand, 29713019 - 29712863
Alignment:
262 catgttaaaaaagtacaactttccaattttgcccttgtcat-ttttactaataattaatgaaagtgacttttgaattcatggagatggggtaaaattgaa 360  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||| |    
29713019 catgttaaaaaagtacaactttccaattttgcccttgtcatgttttagtaataattaatgaaagtgacttttgaactcatggagatgggataaaattgga 29712920  T
361 atagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
29712919 atagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 29712863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 242 - 417
Target Start/End: Original strand, 47879955 - 47880132
Alignment:
242 tgaaatgattacattgaagacatgttaaaaaa-gtacaactttccaattttgcccttgtcat-ttttactaataattaatgaaagtgacttttgaattca 339  Q
    |||| |||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||| |||    
47879955 tgaattgattacattgaagtcatgttaaaaaatgtacaactttccaatcttgcccttgtcatgttttagtaataattaatgaaagtgacttttgaactca 47880054  T
340 tggagatggggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 417  Q
    |||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
47880055 tggagataaggtaaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 47880132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 250 - 417
Target Start/End: Original strand, 48384864 - 48385033
Alignment:
250 ttacattgaagacatgttaaaaaa-gtacaactttccaattttgcccttgtcat-ttttactaataattaatgaaagtgacttttgaattcatggagatg 347  Q
    ||||||||||| |||| ||||||| |||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||     
48384864 ttacattgaagtcatgataaaaaatgtacaacttttcaattttgcccttgtcatgttttagtaataattaatgaaagtgacttttgaactcatggagata 48384963  T
348 gggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 417  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
48384964 gggtaacattggaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 48385033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 242 - 417
Target Start/End: Complemental strand, 34593121 - 34592944
Alignment:
242 tgaaatgattacattgaagacatgttaaaaaag-tacaactttccaattttgcccttgtcatt-tttactaataattaatgaaagtgacttttgaattca 339  Q
    |||| |||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||  |||| ||||||||||||||| ||||||||||  |||    
34593121 tgaattgattacattgaagtcatgttaaaaaatatacaactttccaattttgcccttgtcatgatttagtaataattaatgaaaatgacttttgacctca 34593022  T
340 tggagatggggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 417  Q
    ||||| | |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
34593021 tggaggtagggtaacattggaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 34592944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 245 - 321
Target Start/End: Original strand, 45487188 - 45487266
Alignment:
245 aatgattacattgaagacatgttaaaaaa-gtacaactttccaattttgcccttgtcat-ttttactaataattaatga 321  Q
    |||||||||||||||| |||||||||||| |||||||||| ||||||||||||| |||| ||||| |||||||||||||    
45487188 aatgattacattgaagtcatgttaaaaaatgtacaacttttcaattttgcccttctcatgttttagtaataattaatga 45487266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 348 - 415
Target Start/End: Original strand, 28164914 - 28164981
Alignment:
348 gggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccac 415  Q
    |||||||| || ||| || ||||||| ||||||  |||||||||||||||||||| ||||||||||||    
28164914 gggtaaaactggaattgtggcatttaataggttcattttactatactttttcttatatttgagaccac 28164981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 414
Target Start/End: Original strand, 6568169 - 6568232
Alignment:
351 taaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagacca 414  Q
    |||||||| ||||||| |||||| |||| || ||||  ||||||||| ||||||||||||||||    
6568169 taaaattggaatagtaacatttaataggatgatttttgtatacttttgcttacatttgagacca 6568232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 383 - 415
Target Start/End: Complemental strand, 29670478 - 29670446
Alignment:
383 ttttactatactttttcttacatttgagaccac 415  Q
    |||||||||||||||||||| ||||||||||||    
29670478 ttttactatactttttcttatatttgagaccac 29670446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 383 - 415
Target Start/End: Complemental strand, 29670527 - 29670495
Alignment:
383 ttttactatactttttcttacatttgagaccac 415  Q
    |||||||||||||||||||| ||||||||||||    
29670527 ttttactatactttttcttatatttgagaccac 29670495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 434 - 462
Target Start/End: Original strand, 47880149 - 47880177
Alignment:
434 ccctacatttgagaccggagggagtacat 462  Q
    |||||||||||||||||||||||||||||    
47880149 ccctacatttgagaccggagggagtacat 47880177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 133; Significance: 7e-69; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 242 - 417
Target Start/End: Complemental strand, 13854040 - 13853864
Alignment:
242 tgaaatgattacattgaagacatgttaaaaaagtacaactttccaattttgcccttgtcatt-tttactaataattaatgaaagtgacttttgaattcat 340  Q
    |||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||  |||| ||||||||||||||||||||||||||| ||||    
13854040 tgaaatgattacatcgaagtcatgttaaaaaagtacaacttttcaattttgcccttgtcatgctttagtaataattaatgaaagtgacttttgaactcat 13853941  T
341 ggagatggggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 417  Q
     ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
13853940 agagatggggtaaaattggaatagtagcatttattaggttgcttttactatactttttcttacatctgagaccacaa 13853864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 242 - 394
Target Start/End: Original strand, 5384694 - 5384848
Alignment:
242 tgaaatgattacattgaagacatgttaaaaaa-gtacaactttccaattttgcccttgtcat-ttttactaataattaatgaaagtgacttttgaattca 339  Q
    |||| |||||||||||||| |||||||||||| |||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||    
5384694 tgaattgattacattgaagtcatgttaaaaaatgtacaacttttcaattttgcccttgtcatgttttagtaataattaatgaaagtgacttttgaactca 5384793  T
340 tggagatggggtaaaattgaaatagtagcatttattaggttgcttttactatact 394  Q
    | || || || |||||||| |||||||||||||||||||||||||||||||||||    
5384794 ttgatattggttaaaattggaatagtagcatttattaggttgcttttactatact 5384848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 242 - 353
Target Start/End: Original strand, 1251764 - 1251877
Alignment:
242 tgaaatgattacattgaagacatgttaaaaaa-gtacaactttccaattttgcccttgtcat-ttttactaataattaatgaaagtgacttttgaattca 339  Q
    |||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||    
1251764 tgaattgattacattgaagtcatgttaaaaaatgtacaactttccaattttgcccttgtcatgttttagtaataattaatgaaagtgacttttgaactca 1251863  T
340 tggagatggggtaa 353  Q
    ||||||| ||||||    
1251864 tggagatagggtaa 1251877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 348 - 417
Target Start/End: Original strand, 1251934 - 1252003
Alignment:
348 gggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 417  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
1251934 gggtaaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 1252003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 414
Target Start/End: Original strand, 647912 - 647966
Alignment:
360 aatagtagcatttattaggttgcttttactatactttttcttacatttgagacca 414  Q
    |||||| ||||||| ||||||  |||||||||||||||||||| |||||||||||    
647912 aatagtggcatttaataggttcattttactatactttttcttatatttgagacca 647966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 133; Significance: 7e-69; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 242 - 417
Target Start/End: Complemental strand, 38929272 - 38929097
Alignment:
242 tgaaatgattacattgaagacatgttaaaaaagtacaactttccaattttgcccttgtcat-ttttactaataattaatgaaagtgacttttgaattcat 340  Q
    |||| |||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| ||||| ||||||||||||||||||||| ||||| ||||    
38929272 tgaattgattacattgaagtcatgttaaaaaagtacaacttttcaattttgcc-ttgtcatgttttagtaataattaatgaaagtgactcttgaactcat 38929174  T
341 ggagatggggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 417  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
38929173 ggagatggggtaaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 38929097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 242 - 417
Target Start/End: Complemental strand, 9614743 - 9614566
Alignment:
242 tgaaatgattacattgaagacatgttaaaaaa-gtacaactttccaattttgcccttgtcat-ttttactaataattaatgaaagtgacttttgaattca 339  Q
    |||| |||||||||||||| |||||||||||| |||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||    
9614743 tgaattgattacattgaagtcatgttaaaaaatgtacaacttttcaattttgcccttgtcatgttttagtaataattaatgaaagtgacttttgaactca 9614644  T
340 tggagatggggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 417  Q
    ||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
9614643 tggagataggataaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 9614566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 242 - 417
Target Start/End: Complemental strand, 51562176 - 51561999
Alignment:
242 tgaaatgattacattgaagacatgttaaaaaa-gtacaactttccaattttgcccttgtcat-ttttactaataattaatgaaagtgacttttgaattca 339  Q
    |||| |||||||||||||| |||||||||||| |||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||    
51562176 tgaattgattacattgaagtcatgttaaaaaatgtacaacttttcaattttgcccttgtcatgttttaataataattaatgaaagtgacttttgaactca 51562077  T
340 tggagatggggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 417  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
51562076 tggagatagggtaaaattggaatagtagcatttattaggttgcttatactatactttttcttacatttgagaccacaa 51561999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 247 - 417
Target Start/End: Complemental strand, 3800558 - 3800386
Alignment:
247 tgattacattgaagacatgttaaaaaa-gtacaactttccaattttgcccttgtcat-ttttactaataattaatgaaagtgacttttgaattcatggag 344  Q
    |||||||||||||  ||| |||||||| |||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||    
3800558 tgattacattgaaatcatattaaaaaatgtacaacttttcaattttgcccttgtcatgttttagtaataattaatgaaagtgacttttgaactcatggag 3800459  T
345 atggggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 417  Q
    || ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
3800458 atagggtaaaattggaatagtagcatttattaggttgcttttactatattttttcttacatttgagaccacaa 3800386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 242 - 353
Target Start/End: Original strand, 23860638 - 23860751
Alignment:
242 tgaaatgattacattgaagacatgttaaaaaa-gtacaactttccaattttgcccttgtcat-ttttactaataattaatgaaagtgacttttgaattca 339  Q
    |||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||    
23860638 tgaattgattacattgaagacatgttaaaaaatgtacaacttttcaattttgcccttgtcatgttttagtaataattaatgaaagtgacttttgaactca 23860737  T
340 tggagatggggtaa 353  Q
    ||||||| ||||||    
23860738 tggagatagggtaa 23860751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 348 - 417
Target Start/End: Original strand, 23860808 - 23860877
Alignment:
348 gggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 417  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
23860808 gggtaaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 23860877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 348 - 414
Target Start/End: Complemental strand, 36834711 - 36834645
Alignment:
348 gggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagacca 414  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
36834711 gggtaaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttgagacca 36834645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 348 - 417
Target Start/End: Complemental strand, 26246219 - 26246150
Alignment:
348 gggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 417  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
26246219 gggtaaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttgagatcacaa 26246150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 348 - 417
Target Start/End: Original strand, 7860963 - 7861032
Alignment:
348 gggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 417  Q
    ||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
7860963 gggtaaaattggaataatagtatttattaggttgcttttactatactttttcttacatttgagaccacaa 7861032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 348 - 417
Target Start/End: Original strand, 47779043 - 47779112
Alignment:
348 gggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 417  Q
    ||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
47779043 gggtaaaattggaatagtagcatttattaggttatttttactatactttttcttacatttgagaccacaa 47779112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 242 - 321
Target Start/End: Original strand, 7860722 - 7860803
Alignment:
242 tgaaatgattacattgaagacatgttaaaaaa-gtacaactttccaattttgcccttgtcat-ttttactaataattaatga 321  Q
    |||| |||||||||||||| |||||||||||| |||||||||| |||||||||||||||||| ||||| |||||||||||||    
7860722 tgaattgattacattgaagtcatgttaaaaaatgtacaacttttcaattttgcccttgtcatgttttagtaataattaatga 7860803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 242 - 321
Target Start/End: Original strand, 47778828 - 47778909
Alignment:
242 tgaaatgattacattgaagacatgttaaaaaa-gtacaactttccaattttgcccttgtcat-ttttactaataattaatga 321  Q
    |||| |||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||| ||||| |||||||||||||    
47778828 tgaattgattacattgaagtcatgttaaaaaatgtacaactttccaattttgcctttgtcatgttttagtaataattaatga 47778909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 242 - 321
Target Start/End: Complemental strand, 26246435 - 26246353
Alignment:
242 tgaaatgattacattgaagacatgttaaaaaa-gtacaac-tttccaattttgcccttgtcat-ttttactaataattaatga 321  Q
    |||| |||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||| ||||| |||||||||||||    
26246435 tgaattgattacattgaagtcatgttaaaaaatgtacaacttttccaattttgcccttgtcatgttttagtaataattaatga 26246353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 242 - 321
Target Start/End: Complemental strand, 36834926 - 36834845
Alignment:
242 tgaaatgattacattgaagacatgttaaaaaag-tacaactttccaattttgcccttgtcat-ttttactaataattaatga 321  Q
    |||| |||||||||||||| ||||||||||||  ||||||||||||||||| |||||||||| ||||| |||||||||||||    
36834926 tgaattgattacattgaagtcatgttaaaaaatatacaactttccaattttacccttgtcatgttttagtaataattaatga 36834845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 130; Significance: 4e-67; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 242 - 417
Target Start/End: Original strand, 41331810 - 41331987
Alignment:
242 tgaaatgattacattgaagacatgttaaaaaa-gtacaactttccaattttgcccttgtcat-ttttactaataattaatgaaagtgacttttgaattca 339  Q
    |||| |||||||||||||  |||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||| |||    
41331810 tgaattgattacattgaaatcatgttaaaaaatgtacaactttccaattttgcccttgtcatgttttagtaataattaatgaaagtggcttttgaactca 41331909  T
340 tggagatggggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 417  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
41331910 tggagatagggtaaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 41331987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 242 - 417
Target Start/End: Complemental strand, 49615972 - 49615796
Alignment:
242 tgaaatgattacattgaagacatgttaaaaaagtacaactttccaattttgcccttgtcat-ttttactaataattaatgaaagtgacttttgaattcat 340  Q
    |||| |||||||||||||| |||||||||||||||||||||| |||||||| | ||||||| ||||| ||||||||||||||||||||| ||||| ||||    
49615972 tgaattgattacattgaagtcatgttaaaaaagtacaacttttcaattttgtcattgtcatgttttagtaataattaatgaaagtgactcttgaactcat 49615873  T
341 ggagatggggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 417  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
49615872 ggagatggggtaaaattggaatagtagcatttattaggttgcttttactatattttttcttacatttgagaccacaa 49615796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 242 - 417
Target Start/End: Complemental strand, 34022393 - 34022217
Alignment:
242 tgaaatgattacattgaagacatgttaaaaaagtacaactttccaattttgcccttgtcat-ttttactaataattaatgaaagtgacttttgaattcat 340  Q
    |||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||| ||||| ||||    
34022393 tgaattgattacattgaagtcatgttaaaaaagtacaacttttcaattttgcccttgtcatgttttagtaataattaatgaaagtgactcttgaactcat 34022294  T
341 ggagatggggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 417  Q
    |||||||||||||||||| ||||||| |||||||||||||  |||||||||||||||||||||||||||||| ||||    
34022293 ggagatggggtaaaattggaatagtaacatttattaggttatttttactatactttttcttacatttgagactacaa 34022217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 303 - 411
Target Start/End: Complemental strand, 41994029 - 41993921
Alignment:
303 ttttactaataattaatgaaagtgacttttgaattcatggagatggggtaaaattgaaatagtagcatttattaggttgcttttactatactttttctta 402  Q
    ||||| ||||||||||||||||||||||||||| ||||| || | |||||| |||| |||||||||||||||||||||| ||||||||||||||||||||    
41994029 ttttaataataattaatgaaagtgacttttgaactcatgaaggtagggtaacattggaatagtagcatttattaggttgtttttactatactttttctta 41993930  T
403 catttgaga 411  Q
    |||||||||    
41993929 catttgaga 41993921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 348 - 417
Target Start/End: Original strand, 51058103 - 51058172
Alignment:
348 gggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 417  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
51058103 gggtaaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 51058172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 348 - 417
Target Start/End: Original strand, 43020708 - 43020777
Alignment:
348 gggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 417  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
43020708 gggtaaaattggaatagtagcatttattaggttacttttactatactttttcttacatttgagaccacaa 43020777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 242 - 321
Target Start/End: Original strand, 51057888 - 51057969
Alignment:
242 tgaaatgattacattgaagacatgttaaaaaag-tacaactttccaattttgcccttgtcat-ttttactaataattaatga 321  Q
    |||| |||||||||||||| ||||||||||||  |||||||||||||||||||||||||||| ||||| |||||||||||||    
51057888 tgaattgattacattgaagtcatgttaaaaaatatacaactttccaattttgcccttgtcatgttttagtaataattaatga 51057969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 242 - 321
Target Start/End: Original strand, 43020493 - 43020574
Alignment:
242 tgaaatgattacattgaagacatgttaaaaaa-gtacaactttccaattttgcccttgtcat-ttttactaataattaatga 321  Q
    |||| |||||||||||||| ||||||||||||  ||||||||| |||||||||||||||||| ||||| |||||||||||||    
43020493 tgaattgattacattgaagtcatgttaaaaaatatacaacttttcaattttgcccttgtcatgttttagtaataattaatga 43020574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 415
Target Start/End: Original strand, 43424117 - 43424184
Alignment:
348 gggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccac 415  Q
    ||||||||||| ||| ||  |||||| ||||||  |||||||||| |||||||||||||||| |||||    
43424117 gggtaaaattggaattgtgtcatttaataggttcattttactatattttttcttacatttgataccac 43424184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 434 - 462
Target Start/End: Original strand, 41332004 - 41332032
Alignment:
434 ccctacatttgagaccggagggagtacat 462  Q
    |||||||||||||||||||||||||||||    
41332004 ccctacatttgagaccggagggagtacat 41332032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 122; Significance: 2e-62; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 242 - 417
Target Start/End: Complemental strand, 16848030 - 16847853
Alignment:
242 tgaaatgattacattgaagacatgttaaaaaa-gtacaactttccaattttgcccttgtcat-ttttactaataattaatgaaagtgacttttgaattca 339  Q
    |||| |||||||||||||| |||| ||||||| || |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||    
16848030 tgaattgattacattgaagtcatgataaaaaatgttcaactttccaattttgcccttgtcatgttttagtaataattaatgaaagtgacttttgaactca 16847931  T
340 tggagatggggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 417  Q
    ||||||| |||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
16847930 tggagatagggtaacattggaatagtagcatttattaggttgtttttactatactttttcttacatttgagaccacaa 16847853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 249 - 417
Target Start/End: Complemental strand, 29411151 - 29410982
Alignment:
249 attacattgaagacatgttaaaaaa-gtacaactttccaattttgcccttgtcat-ttttactaataattaatgaaagtgacttttgaattcatggagat 346  Q
    |||||||||||  |||||||||||| |||||||||| ||||||||||||||| || ||||| ||||||||||||||||||| ||||||| ||||||||||    
29411151 attacattgaaatcatgttaaaaaatgtacaacttttcaattttgcccttgttatgttttagtaataattaatgaaagtga-ttttgaactcatggagat 29411053  T
347 ggggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 417  Q
     ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
29411052 agggtaaaattggaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 29410982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 242 - 321
Target Start/End: Complemental strand, 27594181 - 27594100
Alignment:
242 tgaaatgattacattgaagacatgttaaaaaa-gtacaactttccaattttgcccttgtcat-ttttactaataattaatga 321  Q
    |||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||    
27594181 tgaattgattacattgaagtcatgttaaaaaatgtacaactttccaattttgcccttgtcatgttttagtaataattaatga 27594100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 348 - 417
Target Start/End: Complemental strand, 27592635 - 27592566
Alignment:
348 gggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 417  Q
    ||||||||||| |||||| ||||||||||| || ||||||||||||||||||| ||||||||||||||||    
27592635 gggtaaaattggaatagtggcatttattagtttacttttactatactttttctaacatttgagaccacaa 27592566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 414
Target Start/End: Complemental strand, 21356123 - 21356057
Alignment:
348 gggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagacca 414  Q
    ||||||| ||||||| || ||||||| ||| ||  |||||||||||||||||||| |||||||||||    
21356123 gggtaaatttgaaattgtggcatttaatagatttattttactatactttttcttatatttgagacca 21356057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 414
Target Start/End: Complemental strand, 111835 - 111772
Alignment:
351 taaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagacca 414  Q
    |||||||| ||||||| |||||| |||| || ||||  ||||||||| ||||||||||||||||    
111835 taaaattggaatagtaacatttaataggatgatttttgtatacttttgcttacatttgagacca 111772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 415
Target Start/End: Original strand, 1236279 - 1236326
Alignment:
368 catttattaggttgcttttactatactttttcttacatttgagaccac 415  Q
    |||||| ||||||  |||||||||||||||||||| ||||||||||||    
1236279 catttaataggttcattttactatactttttcttatatttgagaccac 1236326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 411
Target Start/End: Complemental strand, 15552389 - 15552326
Alignment:
348 gggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgaga 411  Q
    ||||||| ||| ||| || ||||||| ||||||  |||||||||||||||||||| ||||||||    
15552389 gggtaaacttggaattgttgcatttaataggttcattttactatactttttcttatatttgaga 15552326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 415
Target Start/End: Original strand, 31498610 - 31498657
Alignment:
368 catttattaggttgcttttactatactttttcttacatttgagaccac 415  Q
    |||||| ||||||  |||||||||||||||||||| ||||||||||||    
31498610 catttaataggttcattttactatactttttcttatatttgagaccac 31498657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 242 - 334
Target Start/End: Complemental strand, 8740950 - 8740857
Alignment:
242 tgaaatgattacattgaagacatgttaaaaaagtacaactttccaattttgcccttgtcat-ttttactaataattaatgaaagtgacttttga 334  Q
    |||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
8740950 tgaattgattacattgaagtcatgttaaaaatgtacaactttccaattttgcccttgtcatattttagtaataattaatgaaagtgacttttga 8740857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 348 - 417
Target Start/End: Complemental strand, 8740792 - 8740723
Alignment:
348 gggtaaaattgaaatagtagcatttattaggttgcttttactatactttttcttacatttgagaccacaa 417  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
8740792 gggtaaaattggaatagtagcatttattaggttgcttttactatactttttcttatatttgagaccacaa 8740723  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 348 - 401
Target Start/End: Original strand, 32742210 - 32742263
Alignment:
348 gggtaaaattgaaatagtagcatttattaggttgcttttactatactttttctt 401  Q
    ||||||| |||||||||| ||||||| ||||||  |||||||||||||||||||    
32742210 gggtaaacttgaaatagtggcatttaataggttcattttactatactttttctt 32742263  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 351 - 414
Target Start/End: Original strand, 13789226 - 13789289
Alignment:
351 taaaattgaaatagtagcatttattaggttg-cttttactatactttttcttacatttgagacca 414  Q
    |||||||| ||||||| |||||| |||| || |||||| ||||||||| ||||||||||||||||    
13789226 taaaattggaatagtaacatttaataggatgactttta-tatacttttgcttacatttgagacca 13789289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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