View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13971_low_4 (Length: 250)
Name: NF13971_low_4
Description: NF13971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13971_low_4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 19395652 - 19395418
Alignment:
| Q |
16 |
acacgataggagtcaacgtggcagagattactatctccaagacaacaatgaagatgatacttcaacaatgctttcaccctctcataaccaagatgaagat |
115 |
Q |
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| T |
19395652 |
acacgataggagtcaacgtggcagagattactatctccaagacaacaatgaagatgatacttcaacaatgctttcaccctctcacaatgaagatgaagat |
19395553 |
T |
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| Q |
116 |
gaaatagaagacgctgctgattctgatgctgacaacaacaacaacaatgatcaacacccatctcacgatatgccttctaaattcctcctctaccaacaat |
215 |
Q |
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| T |
19395552 |
gaaatagaagacgctgctgattctgatgctgacaacaacgacaacaatgatcaacacccatctcacgatatgccttctaaattcctcctctaccaacaat |
19395453 |
T |
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| Q |
216 |
ctgtccaggtttcaataaactacttaattaagtgc |
250 |
Q |
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||||||||||||| ||||||||||||||||||||| |
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| T |
19395452 |
ctgtccaggtttctataaactacttaattaagtgc |
19395418 |
T |
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