View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13971_low_6 (Length: 241)

Name: NF13971_low_6
Description: NF13971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13971_low_6
NF13971_low_6
[»] chr4 (3 HSPs)
chr4 (1-229)||(19395183-19395411)
chr4 (128-160)||(22231105-22231137)
chr4 (132-160)||(39902595-39902623)
[»] chr7 (3 HSPs)
chr7 (78-159)||(30727151-30727236)
chr7 (119-160)||(11211711-11211752)
chr7 (128-160)||(31892171-31892203)
[»] chr3 (3 HSPs)
chr3 (117-154)||(8487551-8487588)
chr3 (117-158)||(17638243-17638284)
chr3 (117-160)||(31317237-31317280)
[»] chr2 (4 HSPs)
chr2 (119-160)||(32356626-32356667)
chr2 (128-160)||(5851714-5851746)
chr2 (128-160)||(19191642-19191674)
chr2 (128-160)||(42639646-42639678)
[»] chr6 (4 HSPs)
chr6 (116-160)||(30256820-30256864)
chr6 (117-160)||(8566991-8567034)
chr6 (129-161)||(7638879-7638911)
chr6 (132-160)||(27772970-27772998)
[»] chr1 (4 HSPs)
chr1 (128-160)||(856001-856033)
chr1 (117-160)||(52127729-52127772)
chr1 (132-160)||(52650803-52650831)
chr1 (132-160)||(52907408-52907436)
[»] chr5 (4 HSPs)
chr5 (117-160)||(8098326-8098369)
chr5 (29-72)||(8089685-8089729)
chr5 (132-160)||(15480346-15480374)
chr5 (117-160)||(42295587-42295631)
[»] chr8 (4 HSPs)
chr8 (128-157)||(8466759-8466788)
chr8 (128-160)||(4828088-4828120)
chr8 (117-160)||(34843125-34843169)
chr8 (132-160)||(37868615-37868643)
[»] scaffold0005 (1 HSPs)
scaffold0005 (132-160)||(288689-288717)


Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 19395411 - 19395183
Alignment:
Q  1 catcatataactgcatatgctatggttagataaacaacttaatttgcagctcatacataagtgcttatcatgtacattgttaaagagtgaattggttgag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19395411 catcatataactgcatatgctatggttagataaacaacttaatttgcagctcatacataagtgcttatcatgtacattgttaaagagtgaattggttgag 19395312  T
Q  101 aaatggtcagaataaatgtttatatgtgggacaatcctcacctcacaagctggttttgtgctaggcccgattaagatttcgaagatacacaaattaaacg 200  Q
    | ||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19395311 agatggtcagaataagtgtttatatgtggggtaatcctcacctcacaagctggttttgtgttaggcccgattaagatttcgaagatacacaaattaaacg 19395212  T
Q  201 aaaatcaaattgtttttgtataagctata 229  Q
    |||||||||||||||||||||||||||||    
T  19395211 aaaatcaaattgtttttgtataagctata 19395183  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 22231137 - 22231105
Alignment:
Q  128 gggacaatcctcacctcacaagctggttttgtg 160  Q
    ||||||||||||||||||||||| |||||||||    
T  22231137 gggacaatcctcacctcacaagccggttttgtg 22231105  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 160
Target Start/End: Complemental strand, 39902623 - 39902595
Alignment:
Q  132 caatcctcacctcacaagctggttttgtg 160  Q
    |||||||||||||||||||||||||||||    
T  39902623 caatcctcacctcacaagctggttttgtg 39902595  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 78 - 159
Target Start/End: Complemental strand, 30727236 - 30727151
Alignment:
Q  78 tgttaaagagtga---attggttgagaaatggtcagaataaatgtttatatgtggga-caatcctcacctcacaagctggttttgt 159  Q
    |||||||||||||   || ||||||||||||| |||||||| |||||||| |||||  ||||||||||||||||||||||||||||    
T  30727236 tgttaaagagtgacacatcggttgagaaatggccagaataagtgtttataagtgggggcaatcctcacctcacaagctggttttgt 30727151  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 11211752 - 11211711
Alignment:
Q  119 tttatatgtgggacaatcctcacctcacaagctggttttgtg 160  Q
    |||||| ||||| ||||||||||||||||||| |||||||||    
T  11211752 tttataagtggggcaatcctcacctcacaagccggttttgtg 11211711  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 31892171 - 31892203
Alignment:
Q  128 gggacaatcctcacctcacaagctggttttgtg 160  Q
    ||||||||||||||||||||||| |||||||||    
T  31892171 gggacaatcctcacctcacaagccggttttgtg 31892203  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 154
Target Start/End: Complemental strand, 8487588 - 8487551
Alignment:
Q  117 tgtttatatgtgggacaatcctcacctcacaagctggt 154  Q
    |||||||| |||||||||||||||||||||||||||||    
T  8487588 tgtttataagtgggacaatcctcacctcacaagctggt 8487551  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 17638243 - 17638284
Alignment:
Q  117 tgtttatatgtgggacaatcctcacctcacaagctggttttg 158  Q
    |||||||| ||||| |||||||||||||||||||||||||||    
T  17638243 tgtttataagtggggcaatcctcacctcacaagctggttttg 17638284  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 160
Target Start/End: Original strand, 31317237 - 31317280
Alignment:
Q  117 tgtttatatgtgggacaatcctcacctcacaagctggttttgtg 160  Q
    |||||||| ||||| ||||||||||||||||||| |||||||||    
T  31317237 tgtttataagtggggcaatcctcacctcacaagccggttttgtg 31317280  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 32356626 - 32356667
Alignment:
Q  119 tttatatgtgggacaatcctcacctcacaagctggttttgtg 160  Q
    |||||| |||||||||||||||| ||||||||||||||||||    
T  32356626 tttataggtgggacaatcctcacgtcacaagctggttttgtg 32356667  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 5851746 - 5851714
Alignment:
Q  128 gggacaatcctcacctcacaagctggttttgtg 160  Q
    ||||||||||||||||||||||| |||||||||    
T  5851746 gggacaatcctcacctcacaagccggttttgtg 5851714  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 19191674 - 19191642
Alignment:
Q  128 gggacaatcctcacctcacaagctggttttgtg 160  Q
    ||||||||||||||||||||||| |||||||||    
T  19191674 gggacaatcctcacctcacaagccggttttgtg 19191642  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 160
Target Start/End: Complemental strand, 42639678 - 42639646
Alignment:
Q  128 gggacaatcctcacctcacaagctggttttgtg 160  Q
    ||||||||| |||||||||||||||||||||||    
T  42639678 gggacaatcgtcacctcacaagctggttttgtg 42639646  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 30256820 - 30256864
Alignment:
Q  116 atgtttatatgtgggacaatcctcacctcacaagctggttttgtg 160  Q
    ||||||||| ||||| ||||||||||||||||||| |||||||||    
T  30256820 atgtttataagtggggcaatcctcacctcacaagccggttttgtg 30256864  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 160
Target Start/End: Complemental strand, 8567034 - 8566991
Alignment:
Q  117 tgtttatatgtgggacaatcctcacctcacaagctggttttgtg 160  Q
    |||||||| ||||||||||||||||||||||| | |||||||||    
T  8567034 tgtttataagtgggacaatcctcacctcacaaaccggttttgtg 8566991  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 161
Target Start/End: Complemental strand, 7638911 - 7638879
Alignment:
Q  129 ggacaatcctcacctcacaagctggttttgtgc 161  Q
    |||||||| ||||||||||||||||||||||||    
T  7638911 ggacaatcttcacctcacaagctggttttgtgc 7638879  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 160
Target Start/End: Original strand, 27772970 - 27772998
Alignment:
Q  132 caatcctcacctcacaagctggttttgtg 160  Q
    |||||||||||||||||||||||||||||    
T  27772970 caatcctcacctcacaagctggttttgtg 27772998  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 856001 - 856033
Alignment:
Q  128 gggacaatcctcacctcacaagctggttttgtg 160  Q
    |||||||||||||||||||||||||||||||||    
T  856001 gggacaatcctcacctcacaagctggttttgtg 856033  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 160
Target Start/End: Original strand, 52127729 - 52127772
Alignment:
Q  117 tgtttatatgtgggacaatcctcacctcacaagctggttttgtg 160  Q
    |||||||| ||||| ||||||||||||||||||||| |||||||    
T  52127729 tgtttataagtggggcaatcctcacctcacaagctgcttttgtg 52127772  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 160
Target Start/End: Complemental strand, 52650831 - 52650803
Alignment:
Q  132 caatcctcacctcacaagctggttttgtg 160  Q
    |||||||||||||||||||||||||||||    
T  52650831 caatcctcacctcacaagctggttttgtg 52650803  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 160
Target Start/End: Original strand, 52907408 - 52907436
Alignment:
Q  132 caatcctcacctcacaagctggttttgtg 160  Q
    |||||||||||||||||||||||||||||    
T  52907408 caatcctcacctcacaagctggttttgtg 52907436  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 160
Target Start/End: Original strand, 8098326 - 8098369
Alignment:
Q  117 tgtttatatgtgggacaatcctcacctcacaagctggttttgtg 160  Q
    |||||||| ||||| ||||||||||||||||||| |||||||||    
T  8098326 tgtttataagtggggcaatcctcacctcacaagccggttttgtg 8098369  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 8089685 - 8089729
Alignment:
Q  29 gataaacaacttaatttgcagctcata-cataagtgcttatcatg 72  Q
    |||||||||||||||||| |||||||| |||||||| ||||||||    
T  8089685 gataaacaacttaatttgtagctcatagcataagtgtttatcatg 8089729  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 160
Target Start/End: Original strand, 15480346 - 15480374
Alignment:
Q  132 caatcctcacctcacaagctggttttgtg 160  Q
    |||||||||||||||||||||||||||||    
T  15480346 caatcctcacctcacaagctggttttgtg 15480374  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 160
Target Start/End: Original strand, 42295587 - 42295631
Alignment:
Q  117 tgtttatatgtggga-caatcctcacctcacaagctggttttgtg 160  Q
    |||||||| |||||| ||||||||||||||||||| |||||||||    
T  42295587 tgtttataagtgggagcaatcctcacctcacaagccggttttgtg 42295631  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 157
Target Start/End: Complemental strand, 8466788 - 8466759
Alignment:
Q  128 gggacaatcctcacctcacaagctggtttt 157  Q
    ||||||||||||||||||||||||||||||    
T  8466788 gggacaatcctcacctcacaagctggtttt 8466759  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 4828088 - 4828120
Alignment:
Q  128 gggacaatcctcacctcacaagctggttttgtg 160  Q
    ||||||||||||||||||||||| |||||||||    
T  4828088 gggacaatcctcacctcacaagccggttttgtg 4828120  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 160
Target Start/End: Original strand, 34843125 - 34843169
Alignment:
Q  117 tgtttatatgtggga-caatcctcacctcacaagctggttttgtg 160  Q
    |||||||| |||||| ||||||||||||||||||| |||||||||    
T  34843125 tgtttataagtgggagcaatcctcacctcacaagccggttttgtg 34843169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 160
Target Start/End: Complemental strand, 37868643 - 37868615
Alignment:
Q  132 caatcctcacctcacaagctggttttgtg 160  Q
    |||||||||||||||||||||||||||||    
T  37868643 caatcctcacctcacaagctggttttgtg 37868615  T

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Target: scaffold0005 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 160
Target Start/End: Complemental strand, 288717 - 288689
Alignment:
Q  132 caatcctcacctcacaagctggttttgtg 160  Q
    |||||||||||||||||||||||||||||    
T  288717 caatcctcacctcacaagctggttttgtg 288689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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