View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13972_high_1 (Length: 532)

Name: NF13972_high_1
Description: NF13972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13972_high_1
NF13972_high_1
[»] chr3 (25 HSPs)
chr3 (12-515)||(22621759-22622260)
chr3 (341-512)||(22649007-22649178)
chr3 (342-502)||(21936607-21936767)
chr3 (336-502)||(30990130-30990296)
chr3 (371-502)||(22104206-22104337)
chr3 (343-502)||(22178872-22179031)
chr3 (361-508)||(18967819-18967966)
chr3 (382-508)||(22616093-22616219)
chr3 (343-503)||(22113844-22114004)
chr3 (371-503)||(22010314-22010446)
chr3 (343-503)||(22033981-22034141)
chr3 (371-503)||(22186480-22186612)
chr3 (342-498)||(22657928-22658084)
chr3 (325-503)||(21945072-21945248)
chr3 (424-508)||(2806826-2806910)
chr3 (424-508)||(2789923-2790007)
chr3 (424-508)||(2818122-2818206)
chr3 (439-488)||(3311130-3311179)
chr3 (439-488)||(3322729-3322778)
chr3 (103-187)||(22649273-22649356)
chr3 (424-507)||(2796926-2797009)
chr3 (438-508)||(2758793-2758863)
chr3 (424-500)||(2748563-2748639)
chr3 (424-500)||(2768634-2768710)
chr3 (445-493)||(3304446-3304494)
[»] chr1 (3 HSPs)
chr1 (342-508)||(34988680-34988846)
chr1 (341-508)||(34979622-34979789)
chr1 (342-508)||(34974965-34975131)
[»] chr7 (2 HSPs)
chr7 (424-490)||(873405-873471)
chr7 (424-490)||(1234682-1234748)
[»] scaffold0691 (1 HSPs)
scaffold0691 (424-508)||(6641-6725)


Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 12 - 515
Target Start/End: Complemental strand, 22622260 - 22621759
Alignment:
Q  12 tcatcacccttttcctacaaagacattcataccaaggtcgtcttttaaatttgtttttagacggctaatataacaaagaaaataaaaaataatgttcaat 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||  |||||||||||||||||||||||    
T  22622260 tcatcacccttttcctacaaagacattcataccaaggtcgtcttttaaatttgtttttggacctctaatataaca--gaaaataaaaaataatgttcaat 22622163  T
Q  112 tacttttataggtccgttagatcatatgattcacaagaagctctagtctaagaaaatacatagaaagtctcaacttaaacatcaatgcatacacgtcttt 211  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22622162 tacttttataggtccgttggatcatatgattcacaagaagctctagtctaagaaaatacatagaaagtctcaacttaaacatcaatgcatacacgtcttt 22622063  T
Q  212 cttaaacaatattgtagaatgacaaagtcaaattaaaagtattcctagtagaaggtgnnnnnnnnnnnnnnn----ataagtcttgagaaatacaatttt 307  Q
    |||||||||||||||| ||||||||||||||||||    ||||||||||||||||||                   ||||||||||||||||||||||||    
T  22622062 cttaaacaatattgtacaatgacaaagtcaaatta----tattcctagtagaaggtgatatatatatatatatataataagtcttgagaaatacaatttt 22621967  T
Q  308 catatcaccaaaacacaaatcagaacttgactaaaatggcagaaattgcagtgtcttttgcagttgaccaattacttccattgttaagggaagaagccag 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22621966 catatcaccaaaacacaaatcagaacttgactaaaatggcagaaattgcagtgtcttttgcagttgaccaattacttccattgttaagggaagaagccag 22621867  T
Q  408 tttgctcaatggcattcacaaagaatttgcagacattaaagatgaacttgaaagcatccaagccttccttaaggatgctgatagaagagctgcaggtgaa 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22621866 tttgctcaatggcattcacaaagaatttgcagacattaaagatgaacttgaaagcatccaagccttccttaaggatgctgatagaagagctgcaggtgaa 22621767  T
Q  508 gaagataa 515  Q
    ||||||||    
T  22621766 gaagataa 22621759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 341 - 512
Target Start/End: Complemental strand, 22649178 - 22649007
Alignment:
Q  341 aaatggcagaaattgcagtgtcttttgcagttgaccaattacttccattgttaagggaagaagccagtttgctcaatggcattcacaaagaatttgcaga 440  Q
    ||||||||||||| |||||||||||||| ||||||||| ||||||  |||||||||||||||||  || || | || ||||||||||| ||||||||| |    
T  22649178 aaatggcagaaatggcagtgtcttttgcggttgaccaactacttcatttgttaagggaagaagctggtctgttgaaaggcattcacaacgaatttgcaaa 22649079  T
Q  441 cattaaagatgaacttgaaagcatccaagccttccttaaggatgctgatagaagagctgcaggtgaagaaga 512  Q
    ||||||||||||||| || | ||||||||||| ||||||||||||||||||||||||||| | |||||||||    
T  22649078 cattaaagatgaactggagatcatccaagcctcccttaaggatgctgatagaagagctgccgctgaagaaga 22649007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 342 - 502
Target Start/End: Original strand, 21936607 - 21936767
Alignment:
Q  342 aatggcagaaattgcagtgtcttttgcagttgaccaattacttccattgttaagggaagaagccagtttgctcaatggcattcacaaagaatttgcagac 441  Q
    |||||||||||| || |||||||||||  |||||||| | ||||| ||||| |  ||||||| || | | ||||| ||  ||||||| ||||||| ||||    
T  21936607 aatggcagaaatggctgtgtcttttgctattgaccaacttcttccgttgttgacagaagaagtcaatcttctcaaaggtgttcacaaggaatttggagac 21936706  T
Q  442 attaaagatgaacttgaaagcatccaagccttccttaaggatgctgatagaagagctgcag 502  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21936707 attaaagatgaacttgaaagcatccaagccttccttaaggatgctgatagaagagctgcag 21936767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 336 - 502
Target Start/End: Complemental strand, 30990296 - 30990130
Alignment:
Q  336 gactaaaatggcagaaattgcagtgtcttttgcagttgaccaattacttccattgttaagggaagaagccagtttgctcaatggcattcacaaagaattt 435  Q
    |||| ||||||||||||||||||||||||| |   |||| ||| |||||||| |||||||||||||||||| | |||| |  ||  ||||||| ||||||    
T  30990296 gactcaaatggcagaaattgcagtgtctttagttattgatcaactacttccactgttaagggaagaagccaatctgctaagaggtgttcacaaggaattt 30990197  T
Q  436 gcagacattaaagatgaacttgaaagcatccaagccttccttaaggatgctgatagaagagctgcag 502  Q
     |||| ||||||||||||||||||||||| |||||||| ||||| |||||||||| |||||||||||    
T  30990196 tcagatattaaagatgaacttgaaagcattcaagcctttcttaaagatgctgataaaagagctgcag 30990130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 371 - 502
Target Start/End: Original strand, 22104206 - 22104337
Alignment:
Q  371 ttgaccaattacttccattgttaagggaagaagccagtttgctcaatggcattcacaaagaatttgcagacattaaagatgaacttgaaagcatccaagc 470  Q
    |||||||| || |||||||||||||||| |||||||   || | |  ||| ||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  22104206 ttgaccaactagttccattgttaagggatgaagccaagctgttgagaggcgttcacaaggaatttgcagaccttaaagatgaacttgaaagcatccaagc 22104305  T
Q  471 cttccttaaggatgctgatagaagagctgcag 502  Q
    |||||| || ||||||||||||||||||||||    
T  22104306 cttcctcaaagatgctgatagaagagctgcag 22104337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 343 - 502
Target Start/End: Original strand, 22178872 - 22179031
Alignment:
Q  343 atggcagaaattgcagtgtcttttgcagttgaccaattacttccattgttaagggaagaagccagtttgctcaatggcattcacaaagaatttgcagaca 442  Q
    ||||||||||| ||||| ||||||||  |||||||| | |||||||||||||   |||||| || | | ||||| ||  ||| ||| ||||||| ||| |    
T  22178872 atggcagaaatggcagtttcttttgctattgaccaactgcttccattgttaacacaagaagtcaatcttctcaaaggtgttcccaaggaatttgaagata 22178971  T
Q  443 ttaaagatgaacttgaaagcatccaagccttccttaaggatgctgatagaagagctgcag 502  Q
    ||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||    
T  22178972 ttaaagatgaatttgaaagcatccaagccttcctcaaagatgctgatagaagagctgcag 22179031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 361 - 508
Target Start/End: Complemental strand, 18967966 - 18967819
Alignment:
Q  361 tcttttgcagttgaccaattacttccattgttaagggaagaagccagtttgctcaatggcattcacaaagaatttgcagacattaaagatgaacttgaaa 460  Q
    ||||||||  |||||||| | |||||||| ||||  ||||||| |||| ||||||| |   ||||||| ||||||| |||||||||||||||||||||||    
T  18967966 tcttttgcgattgaccaacttcttccattattaacagaagaagtcagtctgctcaaagatgttcacaacgaatttgaagacattaaagatgaacttgaaa 18967867  T
Q  461 gcatccaagccttccttaaggatgctgatagaagagctgcaggtgaag 508  Q
    | ||||||||||| ||| |||||||||||| |||||||| || |||||    
T  18967866 gtatccaagcctttcttcaggatgctgataaaagagctgtagctgaag 18967819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 382 - 508
Target Start/End: Complemental strand, 22616219 - 22616093
Alignment:
Q  382 cttccattgttaagggaagaagccagtttgctcaatggcattcacaaagaatttgcagacattaaagatgaacttgaaagcatccaagccttccttaagg 481  Q
    |||||| |||||||| ||||||||| ||||||    ||||| ||||| ||||||||| |||| |||||||||||||||||||||||||| ||||||||||    
T  22616219 cttccactgttaaggaaagaagccaatttgcttggaggcatccacaaggaatttgcatacatcaaagatgaacttgaaagcatccaagcattccttaagg 22616120  T
Q  482 atgctgatagaagagctgcaggtgaag 508  Q
    | || || | ||||||||||| |||||    
T  22616119 acgccgaaaaaagagctgcagttgaag 22616093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 343 - 503
Target Start/End: Original strand, 22113844 - 22114004
Alignment:
Q  343 atggcagaaattgcagtgtcttttgcagttgaccaattacttccattgttaagggaagaagccagtttgctcaatggcattcacaaagaatttgcagaca 442  Q
    |||||||||||  | |||||||| |  ||||||||| |||||||| ||||||||||||||||||   || | |  ||| ||||||| || || ||||| |    
T  22113844 atggcagaaatgtcggtgtctttagttgttgaccaactacttccactgttaagggaagaagccaagctgttgagaggcgttcacaaggagttcgcagaga 22113943  T
Q  443 ttaaagatgaacttgaaagcatccaagccttccttaaggatgctgatagaagagctgcagg 503  Q
    ||||||||||||| |||||||| ||||| ||||| ||||||||||||| |||||| |||||    
T  22113944 ttaaagatgaactggaaagcattcaagcattcctgaaggatgctgataaaagagcagcagg 22114004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 371 - 503
Target Start/End: Original strand, 22010314 - 22010446
Alignment:
Q  371 ttgaccaattacttccattgttaagggaagaagccagtttgctcaatggcattcacaaagaatttgcagacattaaagatgaacttgaaagcatccaagc 470  Q
    |||||||| |||||||| |||||||||||||| |||   || | |  ||||||||||| || |||||| ||||||||| |||||| |||||||| |||||    
T  22010314 ttgaccaactacttccagtgttaagggaagaaaccaagctgttgagaggcattcacaaggagtttgcaaacattaaagctgaactggaaagcattcaagc 22010413  T
Q  471 cttccttaaggatgctgatagaagagctgcagg 503  Q
     ||||| ||||||||||||| |||||| |||||    
T  22010414 attcctgaaggatgctgataaaagagcagcagg 22010446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 343 - 503
Target Start/End: Original strand, 22033981 - 22034141
Alignment:
Q  343 atggcagaaattgcagtgtcttttgcagttgaccaattacttccattgttaagggaagaagccagtttgctcaatggcattcacaaagaatttgcagaca 442  Q
    ||||| ||||| || |||||||| |  ||||||||| |||||||| |||||| |||||||||||   || | |  ||| ||||||| || || ||||| |    
T  22033981 atggcggaaatggcggtgtctttagttgttgaccaactacttccactgttaacggaagaagccaagctgttgagaggcgttcacaaggagttcgcagaga 22034080  T
Q  443 ttaaagatgaacttgaaagcatccaagccttccttaaggatgctgatagaagagctgcagg 503  Q
    ||||||||||||| |||||||| ||||| ||||| ||||||||||||| |||||| |||||    
T  22034081 ttaaagatgaactggaaagcattcaagcattcctgaaggatgctgataaaagagcagcagg 22034141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 371 - 503
Target Start/End: Original strand, 22186480 - 22186612
Alignment:
Q  371 ttgaccaattacttccattgttaagggaagaagccagtttgctcaatggcattcacaaagaatttgcagacattaaagatgaacttgaaagcatccaagc 470  Q
    |||||||| |||||||| |||||||||||||| |||   || | |  ||||||||||| || |||||| ||||||||| |||||| |||||||| |||||    
T  22186480 ttgaccaactacttccagtgttaagggaagaaaccaagctgttgagaggcattcacaaggattttgcaaacattaaagctgaactggaaagcattcaagc 22186579  T
Q  471 cttccttaaggatgctgatagaagagctgcagg 503  Q
     ||||| ||||||||||||| |||||| |||||    
T  22186580 attcctgaaggatgctgataaaagagcagcagg 22186612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 342 - 498
Target Start/End: Complemental strand, 22658084 - 22657928
Alignment:
Q  342 aatggcagaaattgcagtgtcttttgcagttgaccaattacttccattgttaagggaagaagccagtttgctcaatggcattcacaaagaatttgcagac 441  Q
    |||||||||||| || |||||||||||  |||||||||| |||||| ||||||  | ||||  || | ||||||| ||  |||||||  ||||| ||||     
T  22658084 aatggcagaaatagcggtgtcttttgctattgaccaattgcttccactgttaacaggagaaatcaatctgctcaaaggtgttcacaagaaattttcagat 22657985  T
Q  442 attaaagatgaacttgaaagcatccaagccttccttaaggatgctgatagaagagct 498  Q
    |||||||||||||| || || |||| ||||||||||||||| ||||| |||||||||    
T  22657984 attaaagatgaactggagagtatccgagccttccttaaggacgctgacagaagagct 22657928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 325 - 503
Target Start/End: Original strand, 21945072 - 21945248
Alignment:
Q  325 aatcagaacttgactaaaatggcagaaattgcagtgtcttttgcagttgaccaattacttccattgttaagggaagaagccagtttgctcaatggcattc 424  Q
    ||||||| |||||||||  |||| ||||| || |||||||| |  ||||||||| || ||||| |||||||||||||||| |   || | |  ||| |||    
T  21945072 aatcagagcttgactaa--tggcggaaatggcggtgtctttagttgttgaccaactagttccactgttaagggaagaagctaagctgttgagaggcgttc 21945169  T
Q  425 acaaagaatttgcagacattaaagatgaacttgaaagcatccaagccttccttaaggatgctgatagaagagctgcagg 503  Q
    | || || || ||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||| |||||| |||||    
T  21945170 ataacgagttcgcagagattaaagatgaacttgaaagcattcaagcattcctcaaggatgctgataaaagagcagcagg 21945248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 424 - 508
Target Start/End: Original strand, 2806826 - 2806910
Alignment:
Q  424 cacaaagaatttgcagacattaaagatgaacttgaaagcatccaagccttccttaaggatgctgatagaagagctgcaggtgaag 508  Q
    |||| ||||||| ||||||| |||||||||||||| ||||| |||| |||||| || ||||| ||||||||||| |||| |||||    
T  2806826 cacacagaattttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagatagaagagcagcagatgaag 2806910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 424 - 508
Target Start/End: Original strand, 2789923 - 2790007
Alignment:
Q  424 cacaaagaatttgcagacattaaagatgaacttgaaagcatccaagccttccttaaggatgctgatagaagagctgcaggtgaag 508  Q
    |||||||| |||  |||||| |||||||||||||| ||||| |||| |||||| || ||||| |||| ||||||||||| |||||    
T  2789923 cacaaagattttttagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagatataagagctgcagatgaag 2790007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 424 - 508
Target Start/End: Original strand, 2818122 - 2818206
Alignment:
Q  424 cacaaagaatttgcagacattaaagatgaacttgaaagcatccaagccttccttaaggatgctgatagaagagctgcaggtgaag 508  Q
    |||| ||| ||| ||||||| ||||||||||| ||||||||||||| |||||| || ||||| |||||||| || |||| |||||    
T  2818122 cacagagatttttcagacatcaaagatgaactagaaagcatccaagtcttcctcaaagatgcagatagaagggcagcagatgaag 2818206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 439 - 488
Target Start/End: Complemental strand, 3311179 - 3311130
Alignment:
Q  439 gacattaaagatgaacttgaaagcatccaagccttccttaaggatgctga 488  Q
    ||||| |||||||| ||||| ||||||||||||||||| |||||||||||    
T  3311179 gacatcaaagatgaccttgagagcatccaagccttcctcaaggatgctga 3311130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 439 - 488
Target Start/End: Complemental strand, 3322778 - 3322729
Alignment:
Q  439 gacattaaagatgaacttgaaagcatccaagccttccttaaggatgctga 488  Q
    ||||| |||||||| ||||| ||||||||||||||||| |||||||||||    
T  3322778 gacatcaaagatgaccttgagagcatccaagccttcctcaaggatgctga 3322729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 187
Target Start/End: Complemental strand, 22649356 - 22649273
Alignment:
Q  103 atgttcaattacttttataggtccgttagatcatatgattcacaagaagctctagtctaagaaaatacatagaaagtctcaactt 187  Q
    ||||| |||||| ||||||||||||||  |||||||||||||||| ||||| ||||  || |||||| ||| |||| ||||||||    
T  22649356 atgttaaattacatttataggtccgttgaatcatatgattcacaataagctatagttcaacaaaatatata-aaagcctcaactt 22649273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 424 - 507
Target Start/End: Original strand, 2796926 - 2797009
Alignment:
Q  424 cacaaagaatttgcagacattaaagatgaacttgaaagcatccaagccttccttaaggatgctgatagaagagctgcaggtgaa 507  Q
    |||||||| ||| ||||||| | |||||||||||| ||||| ||||  ||||| || ||||| |||| ||||||||||| ||||    
T  2796926 cacaaagatttttcagacatcacagatgaacttgagagcattcaagttttcctcaaagatgcagatacaagagctgcagatgaa 2797009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 438 - 508
Target Start/End: Original strand, 2758793 - 2758863
Alignment:
Q  438 agacattaaagatgaacttgaaagcatccaagccttccttaaggatgctgatagaagagctgcaggtgaag 508  Q
    |||||| |||||||||||||||||||| |||  |||||| || ||||| |||||||| || |||| |||||    
T  2758793 agacatcaaagatgaacttgaaagcattcaaatcttcctcaaagatgcagatagaagggcagcagatgaag 2758863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 500
Target Start/End: Original strand, 2748563 - 2748639
Alignment:
Q  424 cacaaagaatttgcagacattaaagatgaacttgaaagcatccaagccttccttaaggatgctgatagaagagctgc 500  Q
    |||| ||| ||| ||||||| |||||||||||||| ||||| |||| |||||| || ||||| || ||||| |||||    
T  2748563 cacagagatttttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagacagaagggctgc 2748639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 500
Target Start/End: Original strand, 2768634 - 2768710
Alignment:
Q  424 cacaaagaatttgcagacattaaagatgaacttgaaagcatccaagccttccttaaggatgctgatagaagagctgc 500  Q
    |||| ||| ||| ||||||| |||||||||||||| ||||| |||| |||||| || ||||| || ||||| |||||    
T  2768634 cacagagatttttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagacagaagggctgc 2768710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 445 - 493
Target Start/End: Complemental strand, 3304494 - 3304446
Alignment:
Q  445 aaagatgaacttgaaagcatccaagccttccttaaggatgctgatagaa 493  Q
    |||||||| ||||| ||||||||| ||||||| ||||||||||| ||||    
T  3304494 aaagatgatcttgagagcatccaatccttcctcaaggatgctgacagaa 3304446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 342 - 508
Target Start/End: Original strand, 34988680 - 34988846
Alignment:
Q  342 aatggcagaaattgcagtgtcttttgcagttgaccaattacttccattgttaagggaagaagccagtttgctcaatggcattcacaaagaatttgcagac 441  Q
    |||||||||||| ||||||||||||||  || | ||| | ||||||||||||| ||||||| |||   | || || ||  ||||||||||||||||||||    
T  34988680 aatggcagaaatggcagtgtcttttgctattaagcaactgcttccattgttaacggaagaaaccaaactactgaaaggtgttcacaaagaatttgcagac 34988779  T
Q  442 attaaagatgaacttgaaagcatccaagccttccttaaggatgctgatagaagagctgcaggtgaag 508  Q
    |||||| ||||||| |||||||||||| |||||||| | |||||||||||||||||||||| |||||    
T  34988780 attaaatatgaactggaaagcatccaaaccttccttgaagatgctgatagaagagctgcagctgaag 34988846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 341 - 508
Target Start/End: Original strand, 34979622 - 34979789
Alignment:
Q  341 aaatggcagaaattgcagtgtcttttgcagttgaccaattacttccattgttaagggaagaagccagtttgctcaatggcattcacaaagaatttgcaga 440  Q
    ||||||||||||  ||||||||||||||  |||||||| | |||||||||||||   ||||| |||   | || || ||  |||||||||||||||||||    
T  34979622 aaatggcagaaaaggcagtgtcttttgctattgaccaactgcttccattgttaacataagaaaccaaactactaaaaggtgttcacaaagaatttgcaga 34979721  T
Q  441 cattaaagatgaacttgaaagcatccaagccttccttaaggatgctgatagaagagctgcaggtgaag 508  Q
    ||||||| ||||||| ||||||||  ||||||||||||| |||||||||||||||||||||| |||||    
T  34979722 cattaaatatgaactcgaaagcattgaagccttccttaaagatgctgatagaagagctgcagctgaag 34979789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 342 - 508
Target Start/End: Original strand, 34974965 - 34975131
Alignment:
Q  342 aatggcagaaattgcagtgtcttttgcagttgaccaattacttccattgttaagggaagaagccagtttgctcaatggcattcacaaagaatttgcagac 441  Q
    |||||||||||| ||||||||||||||  |||||||| | |||||||||||||  | | || |||  || || || ||  ||||||||||||||||||||    
T  34974965 aatggcagaaatagcagtgtcttttgctattgaccaactgcttccattgttaacagcaaaaaccaaattactgaaaggtgttcacaaagaatttgcagac 34975064  T
Q  442 attaaagatgaacttgaaagcatccaagccttccttaaggatgctgatagaagagctgcaggtgaag 508  Q
    |||||| ||||||| |||||||| ||||||||||| || ||| |||||||||||||||||| |||||    
T  34975065 attaaatatgaactcgaaagcattcaagccttcctcaaagattctgatagaagagctgcagctgaag 34975131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 424 - 490
Target Start/End: Complemental strand, 873471 - 873405
Alignment:
Q  424 cacaaagaatttgcagacattaaagatgaacttgaaagcatccaagccttccttaaggatgctgata 490  Q
    ||||| || ||||||||||||||||||||||| ||||| || ||||| |||||||||||||||||||    
T  873471 cacaaggagtttgcagacattaaagatgaactggaaagtattcaagcattccttaaggatgctgata 873405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 424 - 490
Target Start/End: Complemental strand, 1234748 - 1234682
Alignment:
Q  424 cacaaagaatttgcagacattaaagatgaacttgaaagcatccaagccttccttaaggatgctgata 490  Q
    ||||| || ||||||||||||||||||||||| ||||| || ||||| |||||||||||||||||||    
T  1234748 cacaaggagtttgcagacattaaagatgaactggaaagtattcaagcattccttaaggatgctgata 1234682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 508
Target Start/End: Complemental strand, 6725 - 6641
Alignment:
Q  424 cacaaagaatttgcagacattaaagatgaacttgaaagcatccaagccttccttaaggatgctgatagaagagctgcaggtgaag 508  Q
    |||| ||| ||| ||||||| |||||||||||||||||||| |||  |||||| || ||||| || ||||  ||||||| |||||    
T  6725 cacacagattttacagacatcaaagatgaacttgaaagcattcaaatcttcctcaaagatgcagacagaaaggctgcagatgaag 6641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University