View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13972_high_3 (Length: 495)

Name: NF13972_high_3
Description: NF13972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13972_high_3
NF13972_high_3
[»] chr5 (3 HSPs)
chr5 (93-163)||(19719114-19719184)
chr5 (262-425)||(4971397-4971560)
chr5 (262-425)||(4696812-4696975)
[»] chr4 (3 HSPs)
chr4 (253-375)||(20715356-20715465)
chr4 (199-251)||(20715123-20715175)
chr4 (289-425)||(3410923-3411059)
[»] chr7 (1 HSPs)
chr7 (262-425)||(39490244-39490407)
[»] chr3 (3 HSPs)
chr3 (262-425)||(6885624-6885787)
chr3 (262-425)||(27971386-27971549)
chr3 (289-425)||(33984999-33985135)
[»] chr1 (1 HSPs)
chr1 (262-425)||(12748630-12748793)
[»] chr8 (1 HSPs)
chr8 (261-425)||(8097306-8097470)
[»] chr6 (2 HSPs)
chr6 (335-425)||(20142473-20142563)
chr6 (335-425)||(22190276-22190366)


Alignment Details
Target: chr5 (Bit Score: 59; Significance: 9e-25; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 93 - 163
Target Start/End: Original strand, 19719114 - 19719184
Alignment:
Q  93 tttatacacaacaatgataacacaatgaaacacaaacatgggtagtgaaactaatagaatgaattgagttt 163  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  19719114 tttacacacaacaatgataacacaatgaaacacaaacatggatagtgaaactaagagaatgaattgagttt 19719184  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 262 - 425
Target Start/End: Original strand, 4971397 - 4971560
Alignment:
Q  262 tcatctttcaaagagcttctatatttgttcaaaactcgagcaccaatgctaaaagcggattcagaggccacaattgttattggaatgcttagtacatcac 361  Q
    ||||||||||  || |||||||| || |||| |||||| || ||||| ||||| || ||||| || |||||  ||||||||||||| || | || ||| |    
T  4971397 tcatctttcattgaacttctatacttattcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgttattggaatactcaatatatcgc 4971496  T
Q  362 aagccatctttgcaagattaggacatctacgactactctcattccaataagctaatatatcaaa 425  Q
    |||||||| |||||||||| |||| ||||||||| || || |||||| ||||||| | ||||||    
T  4971497 aagccatccttgcaagatttggacttctacgacttctttccttccaaaaagctaagacatcaaa 4971560  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 262 - 425
Target Start/End: Original strand, 4696812 - 4696975
Alignment:
Q  262 tcatctttcaaagagcttctatatttgttcaaaactcgagcaccaatgctaaaagcggattcagaggccacaattgttattggaatgcttagtacatcac 361  Q
    ||||||||||  || ||||||||  | |||| |||||| || ||||| ||||| || ||||| || |||||  ||||||||||||| || | || ||| |    
T  4696812 tcatctttcattgaacttctatacctattcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgttattggaatactcaatatatcgc 4696911  T
Q  362 aagccatctttgcaagattaggacatctacgactactctcattccaataagctaatatatcaaa 425  Q
    |||||||| |||||||||| |||| ||||||||| || || |||||| ||||||| | ||||||    
T  4696912 aagccatccttgcaagatttggacttctacgacttctttccttccaaaaagctaagacatcaaa 4696975  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 253 - 375
Target Start/End: Original strand, 20715356 - 20715465
Alignment:
Q  253 tgaactgtttcatctttcaaagagcttctatatttgttcaaaactcgagcaccaatgctaaaagcggattcagaggccacaattgttattggaatgctta 352  Q
    ||||||||  ||||||||||||||||| ||||||| ||||||||||||||||||             |||||||| ||||||||||||||| ||||||||    
T  20715356 tgaactgtaacatctttcaaagagcttatatattttttcaaaactcgagcacca-------------attcagagaccacaattgttattgaaatgctta 20715442  T
Q  353 gtacatcacaagccatctttgca 375  Q
    |||||||| ||||||| ||||||    
T  20715443 gtacatcagaagccatatttgca 20715465  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 20715123 - 20715175
Alignment:
Q  199 taatggcttgttccttcttgtgaaaaatccatattttcttgtatggtgacttc 251  Q
    |||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  20715123 taatggcttgttccttcttgtgaaaaaatcatattttcttgtatgatgacttc 20715175  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 289 - 425
Target Start/End: Original strand, 3410923 - 3411059
Alignment:
Q  289 ttcaaaactcgagcaccaatgctaaaagcggattcagaggccacaattgttattggaatgcttagtacatcacaagccatctttgcaagattaggacatc 388  Q
    |||| |||||| || ||||| |||||  | ||||| || |||||  ||||||||||||| || | || ||| ||||||||| |||||||||| |||| ||    
T  3410923 ttcacaactcgggcgccaatactaaacacagattctgatgccaccgttgttattggaatactcaatatatcgcaagccatccttgcaagatttggacttc 3411022  T
Q  389 tacgactactctcattccaataagctaatatatcaaa 425  Q
    ||||||| || || |||||| ||||||| | ||||||    
T  3411023 tacgacttctttccttccaaaaagctaagacatcaaa 3411059  T

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Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 262 - 425
Target Start/End: Original strand, 39490244 - 39490407
Alignment:
Q  262 tcatctttcaaagagcttctatatttgttcaaaactcgagcaccaatgctaaaagcggattcagaggccacaattgttattggaatgcttagtacatcac 361  Q
    ||||||||||  || ||||||||  | |||| |||||| || ||||| ||||| || ||||| || |||||  ||||||||||||| || | || ||| |    
T  39490244 tcatctttcattgaacttctatacctattcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgttattggaatactcaatatatcgc 39490343  T
Q  362 aagccatctttgcaagattaggacatctacgactactctcattccaataagctaatatatcaaa 425  Q
    |||||||| |||||||||| |||| ||||||||| || || |||||| ||||||| | ||||||    
T  39490344 aagccatccttgcaagatttggacttctacgacttctttccttccaaaaagctaagacatcaaa 39490407  T

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Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 262 - 425
Target Start/End: Original strand, 6885624 - 6885787
Alignment:
Q  262 tcatctttcaaagagcttctatatttgttcaaaactcgagcaccaatgctaaaagcggattcagaggccacaattgttattggaatgcttagtacatcac 361  Q
    ||||||||||  || ||||||||  | |||| |||||| || ||||| ||||| || ||||| || |||||  ||||||||||||| || | || ||| |    
T  6885624 tcatctttcattgaacttctatacctattcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgttattggaatactcaatatatcgc 6885723  T
Q  362 aagccatctttgcaagattaggacatctacgactactctcattccaataagctaatatatcaaa 425  Q
    |||||||| |||||||||| |||| ||||||||| || || |||||| ||||||| | ||||||    
T  6885724 aagccatccttgcaagatttggacttctacgacttctttccttccaaaaagctaagacatcaaa 6885787  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 262 - 425
Target Start/End: Complemental strand, 27971549 - 27971386
Alignment:
Q  262 tcatctttcaaagagcttctatatttgttcaaaactcgagcaccaatgctaaaagcggattcagaggccacaattgttattggaatgcttagtacatcac 361  Q
    ||||||||||  || ||||||||  | |||| |||||| || ||||| ||||| || ||||| || |||||  ||||||||||||| || | || ||| |    
T  27971549 tcatctttcattgaacttctatacctattcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgttattggaatactcaatatatcgc 27971450  T
Q  362 aagccatctttgcaagattaggacatctacgactactctcattccaataagctaatatatcaaa 425  Q
    |||||||| |||||||||| |||| ||||||||| || || |||||| ||||||| | ||||||    
T  27971449 aagccatccttgcaagatttggacttctacgacttctttccttccaaaaagctaagacatcaaa 27971386  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 289 - 425
Target Start/End: Complemental strand, 33985135 - 33984999
Alignment:
Q  289 ttcaaaactcgagcaccaatgctaaaagcggattcagaggccacaattgttattggaatgcttagtacatcacaagccatctttgcaagattaggacatc 388  Q
    |||| |||||| || ||||| ||||| || ||||| || |||||  ||||||||||||| || | || ||| ||| ||||| |||||||||| |||| ||    
T  33985135 ttcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgttattggaatactcaatatatcgcaaaccatccttgcaagatttggacttc 33985036  T
Q  389 tacgactactctcattccaataagctaatatatcaaa 425  Q
    ||||||| || || |||||| ||||||| | ||||||    
T  33985035 tacgacttctttccttccaaaaagctaagacatcaaa 33984999  T

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Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 262 - 425
Target Start/End: Complemental strand, 12748793 - 12748630
Alignment:
Q  262 tcatctttcaaagagcttctatatttgttcaaaactcgagcaccaatgctaaaagcggattcagaggccacaattgttattggaatgcttagtacatcac 361  Q
    ||||||||||  || ||||||||  | |||| |||||| || ||||| ||||| || ||||| || |||||  ||||||||||||| || | || ||| |    
T  12748793 tcatctttcattgaacttctatacctattcacaactcgggcgccaatactaaacgcagattctgatgccaccgttgttattggaatactcaatatatcgc 12748694  T
Q  362 aagccatctttgcaagattaggacatctacgactactctcattccaataagctaatatatcaaa 425  Q
    |||||||| |||||||||| |||| ||||||||| || || |||||| ||||||| | ||||||    
T  12748693 aagccatccttgcaagatttggacttctacgacttctttccttccaaaaagctaagacatcaaa 12748630  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 261 - 425
Target Start/End: Original strand, 8097306 - 8097470
Alignment:
Q  261 ttcatctttcaaagagcttctatatttgttcaaaactcgagcaccaatgctaaaagcggattcagaggccacaattgttattggaatgcttagtacatca 360  Q
    |||||||||||  || || ||||| || |||| ||||||||  ||||| |||||| |  |||| || |||||  ||||||||||||| || | || |||     
T  8097306 ttcatctttcattgaactactatacttattcagaactcgagagccaatactaaaaccatattctgatgccaccgttgttattggaatactcaatatatcg 8097405  T
Q  361 caagccatctttgcaagattaggacatctacgactactctcattccaataagctaatatatcaaa 425  Q
    |||| |||| ||| ||||||||||| ||||||||| || || ||||||||||| || ||||||||    
T  8097406 caagtcatccttgtaagattaggacttctacgacttctttccttccaataagcaaagatatcaaa 8097470  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 425
Target Start/End: Complemental strand, 20142563 - 20142473
Alignment:
Q  335 ttgttattggaatgcttagtacatcacaagccatctttgcaagattaggacatctacgactactctcattccaataagctaatatatcaaa 425  Q
    ||||||||||||| || | || ||| ||||||||| |||||||||| |||| ||| ||||| || || |||||| ||||||| | ||||||    
T  20142563 ttgttattggaatactcaatatatcgcaagccatccttgcaagatttggacttctgcgacttctttccttccaaaaagctaagacatcaaa 20142473  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 425
Target Start/End: Original strand, 22190276 - 22190366
Alignment:
Q  335 ttgttattggaatgcttagtacatcacaagccatctttgcaagattaggacatctacgactactctcattccaataagctaatatatcaaa 425  Q
    ||||||||||||| || | || ||| ||||||||| |||||||||| |||| ||| ||||| || || |||||| ||||||| | ||||||    
T  22190276 ttgttattggaatactcaatatatcgcaagccatccttgcaagatttggacttctgcgacttctttccttccaaaaagctaagacatcaaa 22190366  T

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