View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13972_high_4 (Length: 351)

Name: NF13972_high_4
Description: NF13972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13972_high_4
NF13972_high_4
[»] chr3 (14 HSPs)
chr3 (16-178)||(27221558-27221720)
chr3 (16-137)||(37921750-37921871)
chr3 (191-309)||(36430003-36430117)
chr3 (55-178)||(35127000-35127122)
chr3 (211-336)||(27221374-27221503)
chr3 (55-157)||(2545188-2545290)
chr3 (211-309)||(2544977-2545071)
chr3 (211-309)||(35127177-35127271)
chr3 (47-137)||(36430155-36430244)
chr3 (16-130)||(46278805-46278925)
chr3 (47-130)||(9308794-9308877)
chr3 (211-309)||(46278518-46278612)
chr3 (72-162)||(9291964-9292047)
chr3 (280-309)||(9291868-9291897)
[»] chr6 (7 HSPs)
chr6 (16-166)||(9641-9792)
chr6 (16-166)||(12367-12518)
chr6 (48-157)||(3185831-3185940)
chr6 (211-309)||(12630-12724)
chr6 (211-309)||(17665-17759)
chr6 (211-309)||(9904-9998)
chr6 (78-130)||(30641461-30641513)
[»] chr8 (14 HSPs)
chr8 (47-166)||(13958516-13958635)
chr8 (47-137)||(990109-990199)
chr8 (73-166)||(11676516-11676609)
chr8 (78-166)||(7839829-7839917)
chr8 (70-166)||(30735753-30735842)
chr8 (211-309)||(7839997-7840091)
chr8 (211-309)||(29668750-29668844)
chr8 (211-309)||(30735933-30736027)
chr8 (73-148)||(11668232-11668307)
chr8 (213-308)||(11676270-11676361)
chr8 (96-152)||(29668919-29668975)
chr8 (16-56)||(29668967-29669007)
chr8 (115-162)||(33880782-33880829)
chr8 (213-265)||(11668026-11668078)
[»] chr4 (12 HSPs)
chr4 (20-166)||(28071182-28071329)
chr4 (47-166)||(2035224-2035339)
chr4 (211-309)||(28071416-28071510)
chr4 (211-309)||(50063747-50063841)
chr4 (40-107)||(25536917-25536984)
chr4 (48-107)||(25516641-25516700)
chr4 (194-242)||(25516798-25516846)
chr4 (194-242)||(25536772-25536820)
chr4 (16-56)||(50063973-50064013)
chr4 (191-229)||(2035385-2035423)
chr4 (272-309)||(25516845-25516882)
chr4 (272-309)||(25536736-25536773)
[»] chr5 (7 HSPs)
chr5 (16-130)||(2643437-2643552)
chr5 (47-159)||(11016206-11016318)
chr5 (191-309)||(2315862-2315976)
chr5 (191-309)||(2643611-2643725)
chr5 (211-309)||(11016000-11016094)
chr5 (115-162)||(14435405-14435452)
chr5 (77-118)||(14435282-14435323)
[»] chr1 (8 HSPs)
chr1 (16-127)||(23552344-23552455)
chr1 (211-309)||(35754024-35754118)
chr1 (191-309)||(8081903-8082011)
chr1 (211-309)||(32060517-32060611)
chr1 (18-80)||(35754296-35754358)
chr1 (113-166)||(35754241-35754294)
chr1 (211-267)||(23552468-23552524)
chr1 (96-137)||(8082025-8082066)


Alignment Details
Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 16 - 178
Target Start/End: Complemental strand, 27221720 - 27221558
Alignment:
Q  16 atcgcaaacggcaagcagcaggaacaaactgaaatcgcaaacctgaagaaagagagtgaagcaagaaacggcaacaccagaatcgcaaatcggaagaagg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27221720 atcgcaaacggcaagcagcaggaacaaactgaaatcgcaaacctgaagaaagagagtgaagcaagaaacggcaacaccagaatcgcaaatcggaagaagg 27221621  T
Q  116 aagagaagtaagtaattgatttgtgtaaaaaagataagattcagattccttgtattcttgtgc 178  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27221620 aagagaagtaagtaattgatgtgtgtaaaaaagataagattcagattccttgtattcttgtgc 27221558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 37921750 - 37921871
Alignment:
Q  16 atcgcaaacggcaagcagcaggaacaaactgaaatcgcaaacctgaagaaagagagtgaagcaagaaacggcaacaccagaatcgcaaatcggaagaagg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||| |||    
T  37921750 atcgcaaacggcaagcagcaggaacaaactgaaatcgcaaacctgaacgaagagagtgaagcaagaaacggcaacaccagaatcgcaaatcgcaagcagg 37921849  T
Q  116 aagagaagtaagtaattgattt 137  Q
    ||||||||||||||||||||||    
T  37921850 aagagaagtaagtaattgattt 37921871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 191 - 309
Target Start/End: Complemental strand, 36430117 - 36430003
Alignment:
Q  191 atgagattcgattccttttctcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgtactgtaccgtcttgtaacggcc 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||| |||||||||||    
T  36430117 atgagattcgattccttttctcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctg----ataccgttttgtaacggcc 36430022  T
Q  291 gcaatcccggtaccggtcc 309  Q
    |||||||||||||||||||    
T  36430021 gcaatcccggtaccggtcc 36430003  T

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Target: chr3; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 55 - 178
Target Start/End: Original strand, 35127000 - 35127122
Alignment:
Q  55 aacctgaagaaagagagtgaagcaagaaacggcaacaccagaatcgcaaatcggaagaaggaagagaagtaagtaattgatttgtgtaaaaaagataaga 154  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  35127000 aacctgaagaaagagagtgaagcaagaaacggcaacaccagaatggcaaatcgcaagcaggaagagaagtaagtaattgatttgtgtaaaaaagataaga 35127099  T
Q  155 ttcagattccttgtattcttgtgc 178  Q
    |||   || |||||||||||||||    
T  35127100 ttcctgtt-cttgtattcttgtgc 35127122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 211 - 336
Target Start/End: Complemental strand, 27221503 - 27221374
Alignment:
Q  211 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgtactgtaccgtcttgtaacggccgca----atcccggtaccgg 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    |||||||||||||    
T  27221503 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgtactgtaccgttttgtaacggccgcaatccatcccggtaccgg 27221404  T
Q  307 tccnnnnnnngaaaccttggttgacttaat 336  Q
    |||       ||||||||||||||||||||    
T  27221403 tcctttttttgaaaccttggttgacttaat 27221374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 55 - 157
Target Start/End: Complemental strand, 2545290 - 2545188
Alignment:
Q  55 aacctgaagaaagagagtgaagcaagaaacggcaacaccagaatcgcaaatcggaagaaggaagagaagtaagtaattgatttgtgtaaaaaagataaga 154  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||    
T  2545290 aacctgaacaaagagagtgaagcaagaaacggcaacacaagaatcgcaaatctcaagcaggaagagaagtaagtaattgatttgtgtaaaaaagataaga 2545191  T
Q  155 ttc 157  Q
    |||    
T  2545190 ttc 2545188  T

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Target: chr3; HSP #7
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 211 - 309
Target Start/End: Complemental strand, 2545071 - 2544977
Alignment:
Q  211 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgtactgtaccgtcttgtaacggccgcaatcccggtaccggtcc 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||| ||||||||||||||||||||||||||||||    
T  2545071 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctg----ataccgttttgtaacggccgcaatcccggtaccggtcc 2544977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 211 - 309
Target Start/End: Original strand, 35127177 - 35127271
Alignment:
Q  211 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgtactgtaccgtcttgtaacggccgcaatcccggtaccggtcc 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||| ||||||||||||||||||||||||||||||    
T  35127177 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctg----ataccgttttgtaacggccgcaatcccggtaccggtcc 35127271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 47 - 137
Target Start/End: Complemental strand, 36430244 - 36430155
Alignment:
Q  47 aaatcgcaaacctgaagaaagagagtgaagcaagaaacggcaacaccagaatcgcaaatcggaagaaggaagagaagtaagtaattgattt 137  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  36430244 aaatcgcaaacctgaacaa-gagagtgaagcaagaaacggcaacaccagaatcgcaaatcgcaagcaggaagagaagtaagtaattgattt 36430155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 46278925 - 46278805
Alignment:
Q  16 atcgcaaacggcaagcagcaggaacaaactgaaatcgcaaacctgaagaaagagagt------gaagcaagaaacggcaacaccagaatcgcaaatcgga 109  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |      |||||||||||||||||||||| |||||||||||| |    
T  46278925 atcgcaaacggcaagcagcaggaccaaactgaaatcgcaaacctgaacaaagagaatgaacaagaagcaagaaacggcaacaccaaaatcgcaaatcgca 46278826  T
Q  110 agaaggaagagaagtaagtaa 130  Q
    || | ||||||||||||||||    
T  46278825 agcatgaagagaagtaagtaa 46278805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 47 - 130
Target Start/End: Original strand, 9308794 - 9308877
Alignment:
Q  47 aaatcgcaaacctgaagaaagagagtgaagcaagaaacggcaacaccagaatcgcaaatcggaagaaggaagagaagtaagtaa 130  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||    
T  9308794 aaatcgcaaacctgaagaaagagaatgaagcaagaaacggcaacacgagaatcgcaaatcgcaagcaggaagagaagtaagtaa 9308877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 211 - 309
Target Start/End: Complemental strand, 46278612 - 46278518
Alignment:
Q  211 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgtactgtaccgtcttgtaacggccgcaatcccggtaccggtcc 309  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||     |||||| ||||||||||||||||||||||||||||||    
T  46278612 tcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcacgttggctgctg----ataccgttttgtaacggccgcaatcccggtaccggtcc 46278518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 72 - 162
Target Start/End: Complemental strand, 9292047 - 9291964
Alignment:
Q  72 tgaagcaagaaacggcaacaccagaatcgcaaatcggaagaaggaagagaagtaagtaattgatttgtgtaaaaaagataagattcagatt 162  Q
    ||||||||||||||||||||||||||||||||       | |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9292047 tgaagcaagaaacggcaacaccagaatcgcaa-------gcaggaagagaagtaagtaattgatttgtgtaaaaaagattagattcagatt 9291964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 309
Target Start/End: Complemental strand, 9291897 - 9291868
Alignment:
Q  280 ttgtaacggccgcaatcccggtaccggtcc 309  Q
    ||||||||||||||||||||||||||||||    
T  9291897 ttgtaacggccgcaatcccggtaccggtcc 9291868  T

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Target: chr6 (Bit Score: 112; Significance: 1e-56; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 166
Target Start/End: Original strand, 9641 - 9792
Alignment:
Q  16 atcgcaaacggcaagcagcaggaacaaactgaaa-tcgcaaacctgaagaaagagagtgaagcaagaaacggcaacaccagaatcgcaaatcggaagaag 114  Q
    ||||||||||||| |||||||| ||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||| ||||||| ||| ||    
T  9641 atcgcaaacggcaggcagcagggacaaactgaaaatcgcaaaccttaacaaagagagtgaagcaagaaacggcaacaccagaatcacaaatcgcaagcag 9740  T
Q  115 gaagagaagtaagtaattgatttgtgtaaaaaagataagattcagattcctt 166  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  9741 gaagagaagtaagtaattgatttgtgtaaaaaagataagattcatattcctt 9792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 166
Target Start/End: Original strand, 12367 - 12518
Alignment:
Q  16 atcgcaaacggcaagcagcaggaacaaactgaaa-tcgcaaacctgaagaaagagagtgaagcaagaaacggcaacaccagaatcgcaaatcggaagaag 114  Q
    ||||||||||||| |||||||| ||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||| ||||||| ||| ||    
T  12367 atcgcaaacggcaggcagcagggacaaactgaaaatcgcaaaccttaacaaagagagtgaagcaagaaacggcaacaccagaatcacaaatcgcaagcag 12466  T
Q  115 gaagagaagtaagtaattgatttgtgtaaaaaagataagattcagattcctt 166  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12467 gaagagaagtaagtaattgatttgtgtaaaaaagataagattcatattcctt 12518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 48 - 157
Target Start/End: Original strand, 3185831 - 3185940
Alignment:
Q  48 aatcgcaaacctgaagaaagagagtgaagcaagaaacggcaacaccagaatcgcaaatcggaagaaggaagagaagtaagtaattgatttgtgtaaaaaa 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  3185831 aatcgcaaacctgaagaaagagagtgaagcaagaaacggcaacaccagaatcgcaaatcgcaagcaggaagagaagtaagtaattgatttgtgtaaaaaa 3185930  T
Q  148 gataagattc 157  Q
    ||||||||||    
T  3185931 gataagattc 3185940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 211 - 309
Target Start/End: Original strand, 12630 - 12724
Alignment:
Q  211 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgtactgtaccgtcttgtaacggccgcaatcccggtaccggtcc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||     |||||| ||||||||||||||||||||||||||||||    
T  12630 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcaaggtggctgctg----ataccgttttgtaacggccgcaatcccggtaccggtcc 12724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 211 - 309
Target Start/End: Original strand, 17665 - 17759
Alignment:
Q  211 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgtactgtaccgtcttgtaacggccgcaatcccggtaccggtcc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||     |||||| ||||||||||||||||||||||||||||||    
T  17665 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcaaggtggctgctg----ataccgttttgtaacggccgcaatcccggtaccggtcc 17759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 211 - 309
Target Start/End: Original strand, 9904 - 9998
Alignment:
Q  211 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgtactgtaccgtcttgtaacggccgcaatcccggtaccggtcc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||     |||||| ||||||||||||||||||||||||||||||    
T  9904 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtaaaggtggctgctg----ataccgttttgtaacggccgcaatcccggtaccggtcc 9998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 78 - 130
Target Start/End: Original strand, 30641461 - 30641513
Alignment:
Q  78 aagaaacggcaacaccagaatcgcaaatcggaagaaggaagagaagtaagtaa 130  Q
    ||||||||||||||||||||||| |||||| ||| ||||||||||||||||||    
T  30641461 aagaaacggcaacaccagaatcggaaatcgcaagcaggaagagaagtaagtaa 30641513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 47 - 166
Target Start/End: Complemental strand, 13958635 - 13958516
Alignment:
Q  47 aaatcgcaaacctgaagaaagagagtgaagcaagaaacggcaacaccagaatcgcaaatcggaagaaggaagagaagtaagtaattgatttgtgtaaaaa 146  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  13958635 aaatcgcaaacctgaagaaagagaatgaagcaagaaacggcaacaccagaatcgcaaatcgcaagcaggaagagaagtaagtaattgatttgtgtaaaaa 13958536  T
Q  147 agataagattcagattcctt 166  Q
    ||||||||||||||||||||    
T  13958535 agataagattcagattcctt 13958516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 47 - 137
Target Start/End: Original strand, 990109 - 990199
Alignment:
Q  47 aaatcgcaaacctgaagaaagagagtgaagcaagaaacggcaacaccagaatcgcaaatcggaagaaggaagagaagtaagtaattgattt 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  990109 aaatcgcaaacctgaagaaagagagtgaagcaagaaacggcaacaccagaatcgcaaatcgcaagcaggaagagaagtaagtaattgattt 990199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 73 - 166
Target Start/End: Complemental strand, 11676609 - 11676516
Alignment:
Q  73 gaagcaagaaacggcaacaccagaatcgcaaatcggaagaaggaagagaagtaagtaattgatttgtgtaaaaaagataagattcagattcctt 166  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11676609 gaagcaagaaacggcaacaccagaatcgcaaatcgcaagcaggaagagaagtaagtaattcatttgtgtaaaaaagataagattcagattcctt 11676516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 78 - 166
Target Start/End: Original strand, 7839829 - 7839917
Alignment:
Q  78 aagaaacggcaacaccagaatcgcaaatcggaagaaggaagagaagtaagtaattgatttgtgtaaaaaagataagattcagattcctt 166  Q
    ||||||||||||||||||| |||||||||| ||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  7839829 aagaaacggcaacaccagagtcgcaaatcgcaagcaggaacagaagtaagtaattggtttgtgtaaaaaagataagattcagattcctt 7839917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 70 - 166
Target Start/End: Original strand, 30735753 - 30735842
Alignment:
Q  70 agtgaagcaagaaacggcaacaccagaatcgcaaatcggaagaaggaagagaagtaagtaattgatttgtgtaaaaaagataagattcagattcctt 166  Q
    ||||||||||||||||||||||||||||||||||       | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30735753 agtgaagcaagaaacggcaacaccagaatcgcaa-------gcaggaagagaagtaagtaattgatttgtgtaaaaaagataagattcagattcctt 30735842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 211 - 309
Target Start/End: Original strand, 7839997 - 7840091
Alignment:
Q  211 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgtactgtaccgtcttgtaacggccgcaatcccggtaccggtcc 309  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||     |||||| ||||||||||||||||||||||||||||||    
T  7839997 tcctgtgatttttgttctcgacctgaaaaggtccaaaaacggtcacggtggctgctg----ataccgttttgtaacggccgcaatcccggtaccggtcc 7840091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 211 - 309
Target Start/End: Complemental strand, 29668844 - 29668750
Alignment:
Q  211 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgtactgtaccgtcttgtaacggccgcaatcccggtaccggtcc 309  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||     |||||| ||||||||||| ||||||||||||||||||    
T  29668844 tcctgtgatttttgttctcggcgtgaaaaggtcgaaaaacggtcacggtggctgctg----ataccgttttgtaacggccacaatcccggtaccggtcc 29668750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 211 - 309
Target Start/End: Original strand, 30735933 - 30736027
Alignment:
Q  211 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgtactgtaccgtcttgtaacggccgcaatcccggtaccggtcc 309  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||     |||||| ||||||||||| ||||||||| ||||||||    
T  30735933 tcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcacggtggctgctg----ataccgttttgtaacggcctcaatcccggcaccggtcc 30736027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 11668307 - 11668232
Alignment:
Q  73 gaagcaagaaacggcaacaccagaatcgcaaatcggaagaaggaagagaagtaagtaattgatttgtgtaaaaaag 148  Q
    ||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||| |||||||||||||||    
T  11668307 gaagcaagaaacggcaacaccagaatcgcaagtcgcaagcaggaagagaagtaagtaattcatttgtgtaaaaaag 11668232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 213 - 308
Target Start/End: Complemental strand, 11676361 - 11676270
Alignment:
Q  213 ctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgtactgtaccgtcttgtaacggccgcaatcccggtaccggtc 308  Q
    |||||||||||||||||  |||||||||| |||||||||||||||||||||||    |  |||||  |||||||||||||||||||||||||||||    
T  11676361 ctgtgatttttgttctcaacgtgaaaaggaccaaaaacggtcacggtggctgc----cgataccgatttgtaacggccgcaatcccggtaccggtc 11676270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 96 - 152
Target Start/End: Complemental strand, 29668975 - 29668919
Alignment:
Q  96 aatcgcaaatcggaagaaggaagagaagtaagtaattgatttgtgtaaaaaagataa 152  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||    
T  29668975 aatcgcaaatcgcaagcaggaagagaagtaagtaattgatttgtgtaaaaaggataa 29668919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 29669007 - 29668967
Alignment:
Q  16 atcgcaaacggcaagcagcaggaacaaactgaaatcgcaaa 56  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  29669007 atcgcaaacggcaagcagcaggaacaaactgaaatcgcaaa 29668967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 162
Target Start/End: Complemental strand, 33880829 - 33880782
Alignment:
Q  115 gaagagaagtaagtaattgatttgtgtaaaaaagataagattcagatt 162  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  33880829 gaagagaagtaagtagttgatttgtataaaaaagataagattcagatt 33880782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 213 - 265
Target Start/End: Complemental strand, 11668078 - 11668026
Alignment:
Q  213 ctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgc 265  Q
    ||||| |||||||||||  |||||||||| |||||||||||||||||||||||    
T  11668078 ctgtggtttttgttctcaacgtgaaaaggaccaaaaacggtcacggtggctgc 11668026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 8e-52; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 20 - 166
Target Start/End: Original strand, 28071182 - 28071329
Alignment:
Q  20 caaacggcaagca-gcaggaacaaactgaaatcgcaaacctgaagaaagagagtgaagcaagaaacggcaacaccagaatcgcaaatcggaagaaggaag 118  Q
    ||||||||||||| |||||||||||||||||||  ||||||||| ||| ||| |||||||||||||||||||||||||||||||||||| ||| ||||||    
T  28071182 caaacggcaagcaagcaggaacaaactgaaatcttaaacctgaacaaatagaatgaagcaagaaacggcaacaccagaatcgcaaatcgcaagcaggaag 28071281  T
Q  119 agaagtaagtaattgatttgtgtaaaaaagataagattcagattcctt 166  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||    
T  28071282 agaagtaagtaattcatttgtgcaaaaaagataagattcagattcctt 28071329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 47 - 166
Target Start/End: Original strand, 2035224 - 2035339
Alignment:
Q  47 aaatcgcaaacctgaagaaagagagtgaagcaagaaacggcaacaccagaatcgcaaatcggaagaaggaagagaagtaagtaattgatttgtgtaaaaa 146  Q
    ||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  2035224 aaatcgcaaacctgaaga----gagtgaagcaagaaacggcaacaccagaatcgcaaatcgcaagcaggaagagaagtaagtaattgatttgtgtaaaaa 2035319  T
Q  147 agataagattcagattcctt 166  Q
    ||||||||||||||||||||    
T  2035320 agataagattcagattcctt 2035339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 211 - 309
Target Start/End: Original strand, 28071416 - 28071510
Alignment:
Q  211 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgtactgtaccgtcttgtaacggccgcaatcccggtaccggtcc 309  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||     |||||| ||||||||||||||||||||||||||||||    
T  28071416 tcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcacggtggctgctg----ataccgttttgtaacggccgcaatcccggtaccggtcc 28071510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 211 - 309
Target Start/End: Complemental strand, 50063841 - 50063747
Alignment:
Q  211 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgtactgtaccgtcttgtaacggccgcaatcccggtaccggtcc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||     |||||| ||||||||||||||||||||||||||||||    
T  50063841 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtgacggtggctgctg----ataccgttttgtaacggccgcaatcccggtaccggtcc 50063747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 25536984 - 25536917
Alignment:
Q  40 caaactgaaatcgcaaacctgaagaaagagagtgaagcaagaaacggcaacaccagaatcgcaaatcg 107  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25536984 caaactgaaatcgcaaagctgaagaaagagagtgaagcaagaaacggcaacaccagaatcgcaaatcg 25536917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 25516641 - 25516700
Alignment:
Q  48 aatcgcaaacctgaagaaagagagtgaagcaagaaacggcaacaccagaatcgcaaatcg 107  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25516641 aatcgcaaagctgaagaaagagagtgaagcaagaaacggcaacaccagaatcgcaaatcg 25516700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 25516798 - 25516846
Alignment:
Q  194 agattcgattccttttctcctgtgatttttgttctcggcgtgaaaaggt 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25516798 agattcgattccttttctcctgtgatttttgttctcggcgtgaaaaggt 25516846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 25536820 - 25536772
Alignment:
Q  194 agattcgattccttttctcctgtgatttttgttctcggcgtgaaaaggt 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25536820 agattcgattccttttctcctgtgatttttgttctcggcgtgaaaaggt 25536772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 50064013 - 50063973
Alignment:
Q  16 atcgcaaacggcaagcagcaggaacaaactgaaatcgcaaa 56  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  50064013 atcgcaaacggcaagcagcaggaacaaactgaaatcgcaaa 50063973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 191 - 229
Target Start/End: Original strand, 2035385 - 2035423
Alignment:
Q  191 atgagattcgattccttttctcctgtgatttttgttctc 229  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2035385 atgagattcgattccttttctcctgtgatttttgttctc 2035423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 309
Target Start/End: Original strand, 25516845 - 25516882
Alignment:
Q  272 gtaccgtcttgtaacggccgcaatcccggtaccggtcc 309  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  25516845 gtaccgttttgtaacggccgcaatcccggtaccggtcc 25516882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 309
Target Start/End: Complemental strand, 25536773 - 25536736
Alignment:
Q  272 gtaccgtcttgtaacggccgcaatcccggtaccggtcc 309  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  25536773 gtaccgttttgtaacggccgcaatcccggtaccggtcc 25536736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 2643437 - 2643552
Alignment:
Q  16 atcgcaaacggcaa-gcagcaggaacaaactgaaatcgcaaacctgaagaaagagagtgaagcaagaaacggcaacaccagaatcgcaaatcggaagaag 114  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  2643437 atcgcaaacggcaaagcagcaggaacaaactgaaatcgcaaacctgaagaaagagagtgaagcaagaaacggcaacaccagaatcgcaaatcgcaagcag 2643536  T
Q  115 gaagagaagtaagtaa 130  Q
    ||||||||||||||||    
T  2643537 gaagagaagtaagtaa 2643552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 47 - 159
Target Start/End: Complemental strand, 11016318 - 11016206
Alignment:
Q  47 aaatcgcaaacctgaagaaagagagtgaagcaagaaacggcaacaccagaatcgcaaatcggaagaaggaagagaagtaagtaattgatttgtgtaaaaa 146  Q
    |||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  11016318 aaatcgcaaacctgaacaaagagaatgaagcaagaaacagcaacaccagaatcgcaaatcgcaagcaggaagagaagtaagtaattgatttgtgtaaaaa 11016219  T
Q  147 agataagattcag 159  Q
    |||||| ||||||    
T  11016218 agataaaattcag 11016206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 191 - 309
Target Start/End: Original strand, 2315862 - 2315976
Alignment:
Q  191 atgagattcgattccttttctcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgtactgtaccgtcttgtaacggcc 290  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||     |||||| |||||||||||    
T  2315862 atgagattcgattccttttctccggtgatttttgttctcggcgtgaaaaggtccaaaaacgatcacggtggctgctg----ataccgttttgtaacggcc 2315957  T
Q  291 gcaatcccggtaccggtcc 309  Q
    |||||||||||||||||||    
T  2315958 gcaatcccggtaccggtcc 2315976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 191 - 309
Target Start/End: Original strand, 2643611 - 2643725
Alignment:
Q  191 atgagattcgattccttttctcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgtactgtaccgtcttgtaacggcc 290  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||     |||||| |||||||||||    
T  2643611 atgagattcgattcgttttctcctgtgatttttgttctcggcgtgaaaaggtacaaaaacggtcacggtggctgctg----ataccgttttgtaacggcc 2643706  T
Q  291 gcaatcccggtaccggtcc 309  Q
    |||||||||||||||||||    
T  2643707 gcaatcccggtaccggtcc 2643725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 211 - 309
Target Start/End: Complemental strand, 11016094 - 11016000
Alignment:
Q  211 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgtactgtaccgtcttgtaacggccgcaatcccggtaccggtcc 309  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||     |||||| |||||||| ||||||| |||||||||||||    
T  11016094 tcctgtgatttttgttctcgacgtgaaaaggtccaaaaacggtcacggtggccgctg----ataccgttttgtaacgtccgcaattccggtaccggtcc 11016000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 115 - 162
Target Start/End: Original strand, 14435405 - 14435452
Alignment:
Q  115 gaagagaagtaagtaattgatttgtgtaaaaaagataagattcagatt 162  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  14435405 gaagagaagtaagtaattgatttgtgtaaaaaagataagattgagatt 14435452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 14435282 - 14435323
Alignment:
Q  77 caagaaacggcaacaccagaatcgcaaatcggaagaaggaag 118  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  14435282 caagaaacggcaacaccagaatcgcaaatcggaagcaggaag 14435323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 23552344 - 23552455
Alignment:
Q  16 atcgcaaacggcaagcagcaggaacaaactgaaatcgcaaacctgaagaaagagagtgaagcaagaaacggcaacaccagaatcgcaaatcggaagaagg 115  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||| |||    
T  23552344 atcgcaaacggcaagcagcaggaacaaactgtaatcgcaaacctgaacaaagagagtgaagcaagaaagggcaacaccagaatcgcaaatcgcaagcagg 23552443  T
Q  116 aagagaagtaag 127  Q
    ||||||||||||    
T  23552444 aagagaagtaag 23552455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 211 - 309
Target Start/End: Complemental strand, 35754118 - 35754024
Alignment:
Q  211 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgtactgtaccgtcttgtaacggccgcaatcccggtaccggtcc 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||| |||||||||||||||||||||||| |||||    
T  35754118 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctg----ataccgttttgtaacggccgcaatcccggtacgggtcc 35754024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 191 - 309
Target Start/End: Complemental strand, 8082011 - 8081903
Alignment:
Q  191 atgagattcgattccttttctcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgtactgtaccgtcttgtaacggcc 290  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||          |||| |||||||||||    
T  8082011 atgagattcgattccttttctcctgtgatttttgttctcggcatgaaaaggtccaaaaacgctcacggtggctg----------ccgttttgtaacggcc 8081922  T
Q  291 gcaatcccggtaccggtcc 309  Q
    | |||||||||||||||||    
T  8081921 gtaatcccggtaccggtcc 8081903  T

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Target: chr1; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 211 - 309
Target Start/End: Original strand, 32060517 - 32060611
Alignment:
Q  211 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctgtactgtaccgtcttgtaacggccgcaatcccggtaccggtcc 309  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||     |||||| ||||||||||||||||||||| ||||||||    
T  32060517 tcctgtgatttttgttctcggcgtgaaaagatccaaaaacggtcacggtggctgctg----ataccgttttgtaacggccgcaatcccggcaccggtcc 32060611  T

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Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 35754358 - 35754296
Alignment:
Q  18 cgcaaacggcaagcagcaggaacaaactgaaatcgcaaacctgaagaaagagagtgaagcaag 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  35754358 cgcaaacggcaagcagcaggaacaaactgaaatcgcaaacctgaacaaagagaatgaagcaag 35754296  T

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Target: chr1; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 35754294 - 35754241
Alignment:
Q  113 aggaagagaagtaagtaattgatttgtgtaaaaaagataagattcagattcctt 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35754294 aggaagagaagtaagtaattgatttgtgtaaaaaagataagattcagattcctt 35754241  T

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Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 211 - 267
Target Start/End: Original strand, 23552468 - 23552524
Alignment:
Q  211 tcctgtgatttttgttctcggcgtgaaaaggtccaaaaacggtcacggtggctgctg 267  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23552468 tcctgtgatttttgttctcggcttgaaaaggtccaaaaacggtcacggtggctgctg 23552524  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 137
Target Start/End: Complemental strand, 8082066 - 8082025
Alignment:
Q  96 aatcgcaaatcggaagaaggaagagaagtaagtaattgattt 137  Q
    |||||||||||| ||| ||||||||||||||| |||||||||    
T  8082066 aatcgcaaatcgcaagcaggaagagaagtaagaaattgattt 8082025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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