View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13972_low_2 (Length: 532)
Name: NF13972_low_2
Description: NF13972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13972_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 439; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 4 - 515
Target Start/End: Original strand, 29104066 - 29104565
Alignment:
| Q |
4 |
atgtcgaagaatatctcagagagcacgttgctgtaatctgcaagagtaatgagatactgcattgtttcctttgtcagggaatgaactccgccgaaatttg |
103 |
Q |
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| T |
29104066 |
atgtcaaagaatatctcagagagcacgttgctgtaatctgcaagagtaatgagatactgcattgtttcctctgtcagggaatgaactccgccgaaatttg |
29104165 |
T |
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| Q |
104 |
ccgctgatttggaagaatccttcaatattgtagactcaaattccaaaagaagatttcgtacacactcgattaatcgatgttgcgaattatatgcttgaga |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29104166 |
ccgctgatttggaagaatccttcaatattgtagactcaaattccaaaagaagatttcgtacacactcgattaatcgatgttgcgaattatatgcttgaga |
29104265 |
T |
|
| Q |
204 |
tttaacgactgctattgaattaaacgagaaaattgattcaatctccggcaacaacacggtgattgtagcgtacatatcaagcaatcgaaaaatcttctcc |
303 |
Q |
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| T |
29104266 |
tttaacgactgctgttgaattaaacgagaaaattgattcaatctccggcaacaacacggtgattgtagcgtacatatcaagcaagcgaaaaatcttctcc |
29104365 |
T |
|
| Q |
304 |
ggctttgatttctttgtttttgcaacgacttcaggaaatctgaaaagcaaaatagctccattcttagaaatctcagcaaaacaagcttctttgatggaat |
403 |
Q |
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| T |
29104366 |
ggctttgatttctttgtttttgcaacgacttcaggaaatcttaaaagtaaaatagctccatccttagaaatctcagcaaaacaagcttct---------- |
29104455 |
T |
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| Q |
404 |
tattgatggaattcgaagcgaagattcgatcgcagaggttcctctctccggcgaagagcgtcctcactgagatcttaaccgcttctaaccaactgttgat |
503 |
Q |
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| T |
29104456 |
--ttgatggaattcgaagcgaagattcgatcgcagaggttcctctctccggcgaagagcgtcctcactgagatcttaaccgcctctaaccaactgttgat |
29104553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 4 - 515
Target Start/End: Original strand, 29089805 - 29090304
Alignment:
| Q |
4 |
atgtcgaagaatatctcagagagcacgttgctgtaatctgcaagagtaatgagatactgcattgtttcctttgtcagggaatgaactccgccgaaatttg |
103 |
Q |
| |
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|||||||||||||| ||||| ||||||||||||||||||| ||| | | ||||| |||||||||| | |||| |||||||||| ||||||||||| | |
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| T |
29089805 |
atgtcgaagaatatttcagaaagcacgttgctgtaatctgtaagcttggtaagatattgcattgtttgcgttgtaagggaatgaataccgccgaaattcg |
29089904 |
T |
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| Q |
104 |
ccgctgatttggaagaatccttcaatattgtagactcaaattccaaaagaagatttcgtacacactcgattaatcgatgttgcgaattatatgcttgaga |
203 |
Q |
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|| ||||||||||| ||||||| |||| ||||| ||||| | | || ||||| |||| | || | | || ||||| ||||||||||||||||| |
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| T |
29089905 |
ccagcgatttggaagagtccttcaggattgcggactcgaattctgagaaaatatttcttacagattcaacgagtctttgttgtgaattatatgcttgaga |
29090004 |
T |
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| Q |
204 |
tttaacgactgctattgaattaaacgagaaaattgattcaatctccggcaacaacacggtgattgtagcgtacatatcaagcaatcgaaaaatcttctcc |
303 |
Q |
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| T |
29090005 |
tttaacaccagaggttgaattgaaagagaaaatcgattcaacctccggtaacaacatggtgattgtggcatacatatcaagcaaacggaaaatcttctcc |
29090104 |
T |
|
| Q |
304 |
ggctttgatttctttgtttttgcaacgacttcaggaaatctgaaaagcaaaatagctccat-tcttagaaatctcagcaaaacaagcttctttgatggaa |
402 |
Q |
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|| | ||||||||||||| ||||||| ||||||||||| || || | | ||||||||| |||| ||||| ||| |||||||||||||| |
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| T |
29090105 |
ggtgtccatttctttgttttcgcaacgaattcaggaaatcgtaagagaagagtagctccatctctt-gaaatttcaccaaaacaagcttct--------- |
29090194 |
T |
|
| Q |
403 |
ttattgatggaattcgaagcgaagattcgatcgcagaggttcctctctccggcgaagagcgtcctcactgagatcttaaccgcttctaaccaactgttga |
502 |
Q |
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||||||||||||||||||| ||||| ||||||||||| |||||||| | ||||| || ||||||||||||||||| || |||||||||| ||||| |
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| T |
29090195 |
---ctgatggaattcgaagcgaaaattcgttcgcagaggtttctctctccagaaaagagtgttctcactgagatcttaactgcctctaaccaacagttga |
29090291 |
T |
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