View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13972_low_5 (Length: 262)
Name: NF13972_low_5
Description: NF13972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13972_low_5 |
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| [»] chr3 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 24 - 196
Target Start/End: Complemental strand, 32345261 - 32345089
Alignment:
| Q |
24 |
ctaaatataatgttctactagagaagttagagaaaacacaactaagagacaaattttatccgtcgacattaatcgctgcaagaaaagaaaatcacagtta |
123 |
Q |
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| T |
32345261 |
ctaaatagaatgctctactggagaagttagagaaaacacaactaagagacaaattttatccttcaacattaatcgcttcaagaaaagaaaatcacagtta |
32345162 |
T |
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| Q |
124 |
acaacatcaactaaacctcatcgaaattagttatacaacttgttgccaatttgattttcattcatacgtaatt |
196 |
Q |
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| T |
32345161 |
acaacatcaactaaacctcagcgaaattagttatgcaacttgttgccaatttgcttttcattcatacgtaatt |
32345089 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 227 - 262
Target Start/End: Original strand, 36329176 - 36329211
Alignment:
| Q |
227 |
taataatttataggagaaaacttaggtacaatttct |
262 |
Q |
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| T |
36329176 |
taataattcataggagaaaacttaggtacaatttct |
36329211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 262
Target Start/End: Original strand, 39617830 - 39617864
Alignment:
| Q |
228 |
aataatttataggagaaaacttaggtacaatttct |
262 |
Q |
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| T |
39617830 |
aataatttttaggagaaaacttaggtacaatttct |
39617864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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