View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13972_low_7 (Length: 238)
Name: NF13972_low_7
Description: NF13972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13972_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 171187 - 171394
Alignment:
| Q |
18 |
caatcaatgactagaatgatagaaaggttctcatttctccctttggcattctcttggagatattgcttttctgaacctataactcacgtaacaagcatct |
117 |
Q |
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| T |
171187 |
caatcaatgactagaatgatagaaaggttctcatttcttcctttggcattctcttggagatattgcttttctgaacctataactcacgtaacaagcatct |
171286 |
T |
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| Q |
118 |
taatgtttttcccctctattttttggccgcctttattttgagatagcacctttattctgttttgtttctataatctttttctttaacaatacttgttatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
171287 |
taatgtttttcccctctattttttggccgcctttattttgagatagcacctttattctgttttgtttctataatctttttctttaacaatacttgttatt |
171386 |
T |
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| Q |
218 |
tgtctgtg |
225 |
Q |
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|||||||| |
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| T |
171387 |
tgtctgtg |
171394 |
T |
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