View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13973_high_11 (Length: 310)

Name: NF13973_high_11
Description: NF13973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13973_high_11
NF13973_high_11
[»] chr3 (1 HSPs)
chr3 (30-310)||(40668763-40669043)


Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 30 - 310
Target Start/End: Complemental strand, 40669043 - 40668763
Alignment:
Q  30 tatattacccattgtcggagagattgttgttgctgatctggattatttaaattggccacttgacgtcctgatatcaactgtaacattgtaacaccataag 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  40669043 tatattacccattgtcggagagattgttgttgctgatctggattatttaaattggccacttgacgtcctgatatcaactgtaacatagtaacaccataag 40668944  T
Q  130 aatacacatctgtcccttcagaaacaataccatcttcagcatactcaggagcaagatatctacataaacaataacaacaacattaatgggtataatcaga 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40668943 aatacacatctgtcccttcagaaacaataccatcttcagcatactcaggagcaagatatctacataaacaataacaacaacattaatgggtataatcaga 40668844  T
Q  230 ccatttgtatttgttgtttgtaataatgaaaagcttgaacaaacaaattctcacccaaatgttcccattatccttgtttga 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40668843 ccatttgtatttgttgtttgtaataatgaaaagcttgaacaaacaaattctcacccaaatgttcccattatccttgtttga 40668763  T

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