View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13973_high_9 (Length: 323)
Name: NF13973_high_9
Description: NF13973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13973_high_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 31453613 - 31453389
Alignment:
| Q |
1 |
aaaaacatgtaatcaggggaagnnnnnnnncagacacatcaaagattaaaactttataatcaacccccaattgggtatcccaaaaccatcgcttaattcc |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
31453613 |
aaaaacatgtaatcaggggaagaaaaaaaacagacacatcaaagattaaaactttataatcaacccccaattgggtatcccaaaaccatcgcatagttcc |
31453514 |
T |
|
| Q |
101 |
gtttcaaaccctaaccctnnnnnnnttaaagaacagagaaaaagcgatagtgaaaggtttagcaaagattaaaactatgggtatctgaaactatcgctca |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31453513 |
gtttcaaaccctaaccctaaaaaaattaaagaacagagaaaaagcgatagtgaaaggtttagcaaagattaaaactatgggtatctgaaactatcgctca |
31453414 |
T |
|
| Q |
201 |
attctctgtttcaaaccctaaccct |
225 |
Q |
| |
|
||||||||||||||||| ||||||| |
|
|
| T |
31453413 |
attctctgtttcaaaccttaaccct |
31453389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 277 - 315
Target Start/End: Complemental strand, 31453337 - 31453299
Alignment:
| Q |
277 |
ctatataatcaaaccctggatgggtatctgagaattatc |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31453337 |
ctatataatcaaaccctggatgggtatctgagaattatc |
31453299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University