View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13973_low_1 (Length: 454)

Name: NF13973_low_1
Description: NF13973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13973_low_1
NF13973_low_1
[»] chr2 (5 HSPs)
chr2 (13-430)||(28782815-28783232)
chr2 (13-240)||(28741995-28742222)
chr2 (145-249)||(28699494-28699598)
chr2 (73-124)||(28699422-28699473)
chr2 (151-249)||(28735000-28735098)
[»] chr8 (6 HSPs)
chr8 (73-240)||(10769397-10769564)
chr8 (46-124)||(2034784-2034862)
chr8 (44-106)||(2055874-2055936)
chr8 (73-124)||(2048105-2048156)
chr8 (73-106)||(2059078-2059111)
chr8 (73-105)||(2052018-2052050)
[»] chr4 (2 HSPs)
chr4 (73-124)||(48904896-48904947)
chr4 (393-429)||(3284202-3284238)
[»] chr6 (1 HSPs)
chr6 (369-429)||(10384036-10384097)


Alignment Details
Target: chr2 (Bit Score: 410; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 13 - 430
Target Start/End: Original strand, 28782815 - 28783232
Alignment:
Q  13 gagcagagatcccatcaatcccttttgtattgtagtaggctacatattctgaaatagttatttctttgtatttgggaggattgtcttctgataaaaattc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28782815 gagcagagatcccatcaatcccttttgtattgtagtaggctacatattctgaaatagttatttctttgtatttgggaggattgtcttctgataaaaattc 28782914  T
Q  113 ttttataggtccgtattggtttgagaaagagttaagatctgcattgaaaaaacatgcaacagatactctaggacctatgatgtttgccaacactttgtgc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28782915 ttttataggtccgtattggtttgagaaagagttaagatctgcattgaaaaaacatgcaacagatactctaggacctatgatgtttgccaacactttgtgc 28783014  T
Q  213 tccacactcttgaatttgtcatttgttaccagctgtaactcaaattacaacaatattaattagctacattcgtatatataagttccttacacacacaata 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28783015 tccacactcttgaatttgtcatttgttaccagctgtaactcaaattacaacaatattaattagctacattcgtatatataagttccttacacacacaata 28783114  T
Q  313 agaacatgtagggggaataattagaatcatgacattaaagaaggcaaggagtggaactatatatattacttgcaacactgaaccctaatttatcacagta 412  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28783115 agaacgtgtagggggaataattagaatcatgacattaaagaaggcaaggagtggaactatatatattacttgcaacactgaaccctaatttattacagta 28783214  T
Q  413 atacaaacggaactatag 430  Q
    ||||||||||||||||||    
T  28783215 atacaaacggaactatag 28783232  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 28741995 - 28742222
Alignment:
Q  13 gagcagagatcccatcaatcccttttgtattgtagtaggctacatattctgaaatagttatttctttgtatttgggaggattgtcttctgataaaaattc 112  Q
    |||| ||||| ||||||| |||||||| |||||||||||||||| | |||| || |||  ||||| | ||| | ||||| |||||||||||||||| |||    
T  28741995 gagctgagatgccatcaagcccttttgcattgtagtaggctacaaaatctgtaaaagtggtttctctatatcttggagggttgtcttctgataaaatttc 28742094  T
Q  113 ttttataggtccgtattggtttgagaaagagttaagatctgcattgaaaaaacatgcaacagatactctaggacctatgatgtttgccaacactttgtgc 212  Q
    |||||||||||| ||  | |||      |   || || ||||  |||||||| |||||||||||||||| ||||| ||  | ||||| |  ||| |||||    
T  28742095 ttttataggtccatagagcttttcttgtgctctaggacctgccctgaaaaaagatgcaacagatactcttggaccaatagtatttgctagtactctgtgc 28742194  T
Q  213 tccacactcttgaatttgtcatttgtta 240  Q
    || |||||||||||| ||||||||||||    
T  28742195 tcaacactcttgaatctgtcatttgtta 28742222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 145 - 249
Target Start/End: Original strand, 28699494 - 28699598
Alignment:
Q  145 taagatctgcattgaaaaaacatgcaacagatactctaggacctatgatgtttgccaacactttgtgctccacactcttgaatttgtcatttgttaccag 244  Q
    ||||| |||| |||||||| ||||||||||||| ||| ||||| |||   |||||||  ||| | || || ||||||||||||||||||||||||| |||    
T  28699494 taagacctgccttgaaaaagcatgcaacagatattcttggaccaatgccatttgccagtactctatgttcaacactcttgaatttgtcatttgttatcag 28699593  T
Q  245 ctgta 249  Q
    |||||    
T  28699594 ctgta 28699598  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 28699422 - 28699473
Alignment:
Q  73 tttctttgtatttgggaggattgtcttctgataaaaattcttttataggtcc 124  Q
    ||||||||||| ||||||| |||| ||||||||| |||||| ||||||||||    
T  28699422 tttctttgtatctgggagggttgttttctgataataattctgttataggtcc 28699473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 249
Target Start/End: Original strand, 28735000 - 28735098
Alignment:
Q  151 ctgcattgaaaaaacatgcaacagatactctaggacctatgatgtttgccaacactttgtgctccacactcttgaatttgtcatttgttaccagctgta 249  Q
    |||| |||||||| ||||||||||||| ||| ||||| |||   |||||||  ||| | || || |||||||||||||| ||||||||||  |||||||    
T  28735000 ctgccttgaaaaagcatgcaacagatattcttggaccaatgtcatttgccagtactctatgttcaacactcttgaatttatcatttgttataagctgta 28735098  T

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Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 73 - 240
Target Start/End: Complemental strand, 10769564 - 10769397
Alignment:
Q  73 tttctttgtatttgggaggattgtcttctgataaaaattcttttataggtccgtattggtttgagaaagagttaagatctgcattgaaaaaacatgcaac 172  Q
    ||||| ||||| |||||||||||||||||||||| | ||| ||||||||||| ||  | |||||| | ||  || || | |    |||||||||||||||    
T  10769564 tttctctgtatatgggaggattgtcttctgataatagttcctttataggtccatagagctttgaggatgacctatgaccggtgcagaaaaaacatgcaac 10769465  T
Q  173 agatactctaggacctatgatgtttgccaacactttgtgctccacactcttgaatttgtcatttgtta 240  Q
    ||||| ||| ||||| |   | ||||| |  ||| |||||||||||||||||||||||||||||||||    
T  10769464 agatattcttggaccaacattatttgcaagaactctgtgctccacactcttgaatttgtcatttgtta 10769397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 124
Target Start/End: Complemental strand, 2034862 - 2034784
Alignment:
Q  46 agtaggctacatattctgaaatagttatttctttgtatttgggaggattgtcttctgataaaaattcttttataggtcc 124  Q
    |||| |||||||| || ||||  ||| ||||| ||||||| |||||||||||||||||||| | ||| |||||||||||    
T  2034862 agtaagctacataatcagaaaccgttgtttctctgtatttaggaggattgtcttctgataatagttcctttataggtcc 2034784  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 2055936 - 2055874
Alignment:
Q  44 gtagtaggctacatattctgaaatagttatttctttgtatttgggaggattgtcttctgataa 106  Q
    ||||||||||||||| || | || |||  ||||||||||||| ||||||||||||||||||||    
T  2055936 gtagtaggctacataatcagcaacagtagtttctttgtatttaggaggattgtcttctgataa 2055874  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 124
Target Start/End: Complemental strand, 2048156 - 2048105
Alignment:
Q  73 tttctttgtatttgggaggattgtcttctgataaaaattcttttataggtcc 124  Q
    ||||| ||||||| |||||||||||||||||||| | |||||| ||||||||    
T  2048156 tttctctgtatttaggaggattgtcttctgataatagttctttcataggtcc 2048105  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 106
Target Start/End: Complemental strand, 2059111 - 2059078
Alignment:
Q  73 tttctttgtatttgggaggattgtcttctgataa 106  Q
    ||||| ||||||||||||||||||||||||||||    
T  2059111 tttctctgtatttgggaggattgtcttctgataa 2059078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 105
Target Start/End: Complemental strand, 2052050 - 2052018
Alignment:
Q  73 tttctttgtatttgggaggattgtcttctgata 105  Q
    ||||| |||||||||||||||||||||||||||    
T  2052050 tttctctgtatttgggaggattgtcttctgata 2052018  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 48904896 - 48904947
Alignment:
Q  73 tttctttgtatttgggaggattgtcttctgataaaaattcttttataggtcc 124  Q
    ||||| |||||||||||||||||||||| ||||| | ||| |||||||||||    
T  48904896 tttctctgtatttgggaggattgtcttcagataatagttcctttataggtcc 48904947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 393 - 429
Target Start/End: Complemental strand, 3284238 - 3284202
Alignment:
Q  393 aaccctaatttatcacagtaatacaaacggaactata 429  Q
    |||||||||| |||||||||||| |||||||||||||    
T  3284238 aaccctaattcatcacagtaataaaaacggaactata 3284202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 429
Target Start/End: Complemental strand, 10384097 - 10384036
Alignment:
Q  369 ctatatatattacttgcaacactgaa-ccctaatttatcacagtaatacaaacggaactata 429  Q
    |||||||||||||||  || ||| || ||||||||||||||||||||||||| | |||||||    
T  10384097 ctatatatattacttataatactaaaaccctaatttatcacagtaatacaaatgaaactata 10384036  T

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