View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13974_high_11 (Length: 236)

Name: NF13974_high_11
Description: NF13974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13974_high_11
NF13974_high_11
[»] chr8 (8 HSPs)
chr8 (43-175)||(4676000-4676131)
chr8 (170-230)||(4678245-4678305)
chr8 (91-130)||(14935573-14935612)
chr8 (94-130)||(3379310-3379346)
chr8 (94-130)||(5567425-5567461)
chr8 (1-52)||(21132717-21132768)
chr8 (1-41)||(29708782-29708822)
chr8 (94-130)||(30224229-30224265)
[»] chr7 (5 HSPs)
chr7 (91-130)||(37405646-37405685)
chr7 (94-130)||(4895583-4895619)
chr7 (94-130)||(20046693-20046729)
chr7 (94-130)||(28124784-28124820)
chr7 (94-130)||(28126611-28126647)
[»] chr1 (15 HSPs)
chr1 (1-41)||(36035907-36035947)
chr1 (91-130)||(3282797-3282836)
chr1 (91-130)||(3284498-3284537)
chr1 (91-130)||(9312025-9312064)
chr1 (91-130)||(37664751-37664790)
chr1 (91-130)||(37674473-37674512)
chr1 (91-130)||(37702182-37702221)
chr1 (91-130)||(902073-902112)
chr1 (91-130)||(5924970-5925009)
chr1 (91-130)||(9310408-9310447)
chr1 (1-35)||(52749502-52749536)
chr1 (94-130)||(16808775-16808811)
chr1 (10-50)||(39354255-39354295)
chr1 (1-41)||(45299540-45299580)
chr1 (94-130)||(48940675-48940711)
[»] chr6 (9 HSPs)
chr6 (91-130)||(15866576-15866615)
chr6 (91-130)||(15868388-15868427)
chr6 (91-130)||(32079906-32079945)
chr6 (91-130)||(33869242-33869281)
chr6 (92-130)||(33866096-33866134)
chr6 (1-41)||(2913118-2913158)
chr6 (20-49)||(2310479-2310508)
chr6 (94-130)||(5376876-5376912)
chr6 (94-130)||(5378731-5378767)
[»] chr5 (5 HSPs)
chr5 (91-130)||(39787255-39787294)
chr5 (1-47)||(1098396-1098442)
chr5 (91-127)||(25076315-25076351)
chr5 (91-127)||(25134284-25134320)
chr5 (21-49)||(28319856-28319884)
[»] chr4 (14 HSPs)
chr4 (91-130)||(23985770-23985809)
chr4 (91-130)||(52545297-52545336)
chr4 (1-41)||(10385069-10385109)
chr4 (94-130)||(18656107-18656143)
chr4 (91-130)||(18320074-18320113)
chr4 (91-130)||(18395830-18395869)
chr4 (91-130)||(18398570-18398609)
chr4 (91-130)||(24807420-24807459)
chr4 (94-130)||(7040360-7040396)
chr4 (94-130)||(23564871-23564907)
chr4 (10-50)||(49768675-49768715)
chr4 (12-48)||(51744755-51744791)
chr4 (94-130)||(52518758-52518794)
chr4 (94-130)||(52520600-52520636)
[»] chr3 (6 HSPs)
chr3 (1-41)||(38878276-38878316)
chr3 (15-43)||(900884-900912)
chr3 (10-46)||(7460050-7460086)
chr3 (1-41)||(9484817-9484857)
chr3 (94-130)||(17402979-17403015)
chr3 (10-50)||(38492043-38492083)
[»] scaffold0251 (1 HSPs)
scaffold0251 (91-130)||(6222-6261)
[»] scaffold0006 (1 HSPs)
scaffold0006 (91-130)||(39141-39180)
[»] chr2 (2 HSPs)
chr2 (1-41)||(1748974-1749014)
chr2 (94-130)||(29758119-29758155)


Alignment Details
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 43 - 175
Target Start/End: Original strand, 4676000 - 4676131
Alignment:
Q  43 tattttttatatgtcaacaattggggattttgtctttagaattgttaggaataatcaactatagttagttgatagataaactagagtttaataagaattg 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  4676000 tattttttatatgtcaacaattggggattttgtctttagaattgttaggaataatcaactatagttagttgat-ggtaaactagagtttaataagaattg 4676098  T
Q  143 aagacttttgatatgtaagtgaagatgtaatta 175  Q
    |||||||||||||||||||||||||| ||||||    
T  4676099 aagacttttgatatgtaagtgaagatctaatta 4676131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 4678245 - 4678305
Alignment:
Q  170 taattactcgaaatcatttatacgtctacaaacaaagatttttgtttttgtgtgatgatgt 230  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  4678245 taattactcgaaaccatttatacgtctacaaacaaagatttttgttttcgtgtgatgatgt 4678305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 130
Target Start/End: Original strand, 14935573 - 14935612
Alignment:
Q  91 gaataatcaactatagttagttgatagataaactagagtt 130  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  14935573 gaataatcaactatagttagttgataggtaaactagagtt 14935612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 130
Target Start/End: Complemental strand, 3379346 - 3379310
Alignment:
Q  94 taatcaactatagttagttgatagataaactagagtt 130  Q
    |||||||||||||||||||||||| ||||||||||||    
T  3379346 taatcaactatagttagttgatagttaaactagagtt 3379310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 130
Target Start/End: Original strand, 5567425 - 5567461
Alignment:
Q  94 taatcaactatagttagttgatagataaactagagtt 130  Q
    |||||||||||||||||||||||| ||||||||||||    
T  5567425 taatcaactatagttagttgatagctaaactagagtt 5567461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 21132768 - 21132717
Alignment:
Q  1 attgggtctactaggtcacttattaagggacggaggaagtagtattttttat 52  Q
    |||||||| |||  |||||||||||||||||||||| |||| ||||||||||    
T  21132768 attgggtcaactgtgtcacttattaagggacggagggagtactattttttat 21132717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 29708782 - 29708822
Alignment:
Q  1 attgggtctactaggtcacttattaagggacggaggaagta 41  Q
    |||| ||| ||||||||||||||||||||||||||| ||||    
T  29708782 attgagtcaactaggtcacttattaagggacggagggagta 29708822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 130
Target Start/End: Original strand, 30224229 - 30224265
Alignment:
Q  94 taatcaactatagttagttgatagataaactagagtt 130  Q
    |||||||||||||||||||||||  ||||||||||||    
T  30224229 taatcaactatagttagttgataagtaaactagagtt 30224265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 91 - 130
Target Start/End: Complemental strand, 37405685 - 37405646
Alignment:
Q  91 gaataatcaactatagttagttgatagataaactagagtt 130  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  37405685 gaataatcaactatagttagttgatagataaactagagtt 37405646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 130
Target Start/End: Original strand, 4895583 - 4895619
Alignment:
Q  94 taatcaactatagttagttgatagataaactagagtt 130  Q
    |||||||||||||||||||||||  ||||||||||||    
T  4895583 taatcaactatagttagttgataagtaaactagagtt 4895619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 130
Target Start/End: Complemental strand, 20046729 - 20046693
Alignment:
Q  94 taatcaactatagttagttgatagataaactagagtt 130  Q
    |||||||||||||||||||||||  ||||||||||||    
T  20046729 taatcaactatagttagttgataagtaaactagagtt 20046693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 130
Target Start/End: Complemental strand, 28124820 - 28124784
Alignment:
Q  94 taatcaactatagttagttgatagataaactagagtt 130  Q
    |||||||||||||||||||||||  ||||||||||||    
T  28124820 taatcaactatagttagttgataagtaaactagagtt 28124784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 130
Target Start/End: Complemental strand, 28126647 - 28126611
Alignment:
Q  94 taatcaactatagttagttgatagataaactagagtt 130  Q
    |||||||||||||||||||||||  ||||||||||||    
T  28126647 taatcaactatagttagttgataagtaaactagagtt 28126611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 36035907 - 36035947
Alignment:
Q  1 attgggtctactaggtcacttattaagggacggaggaagta 41  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  36035907 attgggtcaactaggtcacttattaagggacggaggaagta 36035947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 130
Target Start/End: Original strand, 3282797 - 3282836
Alignment:
Q  91 gaataatcaactatagttagttgatagataaactagagtt 130  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  3282797 gaataatcaactatagttagttgataggtaaactagagtt 3282836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 130
Target Start/End: Original strand, 3284498 - 3284537
Alignment:
Q  91 gaataatcaactatagttagttgatagataaactagagtt 130  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  3284498 gaataatcaactatagttagttgataggtaaactagagtt 3284537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 130
Target Start/End: Original strand, 9312025 - 9312064
Alignment:
Q  91 gaataatcaactatagttagttgatagataaactagagtt 130  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  9312025 gaataatcaactatagttagttgataggtaaactagagtt 9312064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 130
Target Start/End: Complemental strand, 37664790 - 37664751
Alignment:
Q  91 gaataatcaactatagttagttgatagataaactagagtt 130  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  37664790 gaataatcaactatagttagttgataggtaaactagagtt 37664751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 130
Target Start/End: Complemental strand, 37674512 - 37674473
Alignment:
Q  91 gaataatcaactatagttagttgatagataaactagagtt 130  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  37674512 gaataatcaactatagttagttgataggtaaactagagtt 37674473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 130
Target Start/End: Original strand, 37702182 - 37702221
Alignment:
Q  91 gaataatcaactatagttagttgatagataaactagagtt 130  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  37702182 gaataatcaactatagttagttgataggtaaactagagtt 37702221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 130
Target Start/End: Original strand, 902073 - 902112
Alignment:
Q  91 gaataatcaactatagttagttgatagataaactagagtt 130  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  902073 gaataatcatctatagttagttgataggtaaactagagtt 902112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 130
Target Start/End: Complemental strand, 5925009 - 5924970
Alignment:
Q  91 gaataatcaactatagttagttgatagataaactagagtt 130  Q
    ||||||||||||||||||||||||||| |||| |||||||    
T  5925009 gaataatcaactatagttagttgataggtaaattagagtt 5924970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 130
Target Start/End: Original strand, 9310408 - 9310447
Alignment:
Q  91 gaataatcaactatagttagttgatagataaactagagtt 130  Q
    ||||||||||||||||||||||||||  ||||||||||||    
T  9310408 gaataatcaactatagttagttgataagtaaactagagtt 9310447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 52749502 - 52749536
Alignment:
Q  1 attgggtctactaggtcacttattaagggacggag 35  Q
    |||||||| ||||||||||||||||||||||||||    
T  52749502 attgggtcaactaggtcacttattaagggacggag 52749536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 130
Target Start/End: Complemental strand, 16808811 - 16808775
Alignment:
Q  94 taatcaactatagttagttgatagataaactagagtt 130  Q
    |||||||||||||||||||||||  ||||||||||||    
T  16808811 taatcaactatagttagttgataagtaaactagagtt 16808775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 39354295 - 39354255
Alignment:
Q  10 actaggtcacttattaagggacggaggaagtagtatttttt 50  Q
    ||||||||| ||||||||||||||||| |||||| ||||||    
T  39354295 actaggtcatttattaagggacggagggagtagtttttttt 39354255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 45299540 - 45299580
Alignment:
Q  1 attgggtctactaggtcacttattaagggacggaggaagta 41  Q
    |||||||| |||  |||||||||||||||||||||||||||    
T  45299540 attgggtcaactgtgtcacttattaagggacggaggaagta 45299580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 130
Target Start/End: Original strand, 48940675 - 48940711
Alignment:
Q  94 taatcaactatagttagttgatagataaactagagtt 130  Q
    |||||||||||||||||||||||  ||||||||||||    
T  48940675 taatcaactatagttagttgataagtaaactagagtt 48940711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 130
Target Start/End: Original strand, 15866576 - 15866615
Alignment:
Q  91 gaataatcaactatagttagttgatagataaactagagtt 130  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  15866576 gaataatcaactatagttagttgataggtaaactagagtt 15866615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 130
Target Start/End: Original strand, 15868388 - 15868427
Alignment:
Q  91 gaataatcaactatagttagttgatagataaactagagtt 130  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  15868388 gaataatcaactatagttagttgataggtaaactagagtt 15868427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 130
Target Start/End: Original strand, 32079906 - 32079945
Alignment:
Q  91 gaataatcaactatagttagttgatagataaactagagtt 130  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  32079906 gaataatcaactatagttagttgataggtaaactagagtt 32079945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 130
Target Start/End: Original strand, 33869242 - 33869281
Alignment:
Q  91 gaataatcaactatagttagttgatagataaactagagtt 130  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  33869242 gaataatcaactatagttagttgataggtaaactagagtt 33869281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 130
Target Start/End: Original strand, 33866096 - 33866134
Alignment:
Q  92 aataatcaactatagttagttgatagataaactagagtt 130  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  33866096 aataatcaactatagttagttgataggtaaactagagtt 33866134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 2913118 - 2913158
Alignment:
Q  1 attgggtctactaggtcacttattaagggacggaggaagta 41  Q
    |||||||| ||||||||||||||||||||||||||| ||||    
T  2913118 attgggtcaactaggtcacttattaagggacggagggagta 2913158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 2310479 - 2310508
Alignment:
Q  20 ttattaagggacggaggaagtagtattttt 49  Q
    ||||||||||||||||||||||||||||||    
T  2310479 ttattaagggacggaggaagtagtattttt 2310508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 130
Target Start/End: Original strand, 5376876 - 5376912
Alignment:
Q  94 taatcaactatagttagttgatagataaactagagtt 130  Q
    |||||||||||||||||||||||  ||||||||||||    
T  5376876 taatcaactatagttagttgataagtaaactagagtt 5376912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 130
Target Start/End: Original strand, 5378731 - 5378767
Alignment:
Q  94 taatcaactatagttagttgatagataaactagagtt 130  Q
    |||||||||||||||||||||||  ||||||||||||    
T  5378731 taatcaactatagttagttgataagtaaactagagtt 5378767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 130
Target Start/End: Complemental strand, 39787294 - 39787255
Alignment:
Q  91 gaataatcaactatagttagttgatagataaactagagtt 130  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  39787294 gaataatcaactatagttagttgataggtaaactagagtt 39787255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 1098396 - 1098442
Alignment:
Q  1 attgggtctactaggtcacttattaagggacggaggaagtagtattt 47  Q
    |||||||| |||||||||||| ||||||||||||||||||| |||||    
T  1098396 attgggtcaactaggtcacttgttaagggacggaggaagtaatattt 1098442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 25076351 - 25076315
Alignment:
Q  91 gaataatcaactatagttagttgatagataaactaga 127  Q
    ||||||||||||||||||||||||||| | |||||||    
T  25076351 gaataatcaactatagttagttgataggttaactaga 25076315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 25134320 - 25134284
Alignment:
Q  91 gaataatcaactatagttagttgatagataaactaga 127  Q
    ||||||||||||||||||||||||||| | |||||||    
T  25134320 gaataatcaactatagttagttgataggttaactaga 25134284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 49
Target Start/End: Original strand, 28319856 - 28319884
Alignment:
Q  21 tattaagggacggaggaagtagtattttt 49  Q
    |||||||||||||||||||||||||||||    
T  28319856 tattaagggacggaggaagtagtattttt 28319884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 130
Target Start/End: Original strand, 23985770 - 23985809
Alignment:
Q  91 gaataatcaactatagttagttgatagataaactagagtt 130  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  23985770 gaataatcaactatagttagttgataggtaaactagagtt 23985809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 130
Target Start/End: Complemental strand, 52545336 - 52545297
Alignment:
Q  91 gaataatcaactatagttagttgatagataaactagagtt 130  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  52545336 gaataatcaactatagttagttgataggtaaactagagtt 52545297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 10385069 - 10385109
Alignment:
Q  1 attgggtctactaggtcacttattaagggacggaggaagta 41  Q
    |||||||| ||||||||||||||||||||||||||| ||||    
T  10385069 attgggtcaactaggtcacttattaagggacggagggagta 10385109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 130
Target Start/End: Original strand, 18656107 - 18656143
Alignment:
Q  94 taatcaactatagttagttgatagataaactagagtt 130  Q
    |||||||||||||||||||||||| ||||||||||||    
T  18656107 taatcaactatagttagttgatagctaaactagagtt 18656143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 130
Target Start/End: Original strand, 18320074 - 18320113
Alignment:
Q  91 gaataatcaactatagttagttgatagataaactagagtt 130  Q
    ||||||||||||||||||| ||||||| ||||||||||||    
T  18320074 gaataatcaactatagttaattgataggtaaactagagtt 18320113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 130
Target Start/End: Complemental strand, 18395869 - 18395830
Alignment:
Q  91 gaataatcaactatagttagttgatagataaactagagtt 130  Q
    ||||||||||||||||||||||||||| ||||||| ||||    
T  18395869 gaataatcaactatagttagttgataggtaaactatagtt 18395830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 130
Target Start/End: Complemental strand, 18398609 - 18398570
Alignment:
Q  91 gaataatcaactatagttagttgatagataaactagagtt 130  Q
    ||||||||||||||||||| ||||||| ||||||||||||    
T  18398609 gaataatcaactatagttaattgataggtaaactagagtt 18398570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 130
Target Start/End: Original strand, 24807420 - 24807459
Alignment:
Q  91 gaataatcaactatagttagttgatagataaactagagtt 130  Q
    ||||||||||||||||||||||||||| |||| |||||||    
T  24807420 gaataatcaactatagttagttgataggtaaattagagtt 24807459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 130
Target Start/End: Original strand, 7040360 - 7040396
Alignment:
Q  94 taatcaactatagttagttgatagataaactagagtt 130  Q
    |||||||||||||||||||||||  ||||||||||||    
T  7040360 taatcaactatagttagttgataagtaaactagagtt 7040396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 130
Target Start/End: Complemental strand, 23564907 - 23564871
Alignment:
Q  94 taatcaactatagttagttgatagataaactagagtt 130  Q
    |||||||||||||||||||||||  ||||||||||||    
T  23564907 taatcaactatagttagttgataagtaaactagagtt 23564871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 49768675 - 49768715
Alignment:
Q  10 actaggtcacttattaagggacggaggaagtagtatttttt 50  Q
    ||||||||| ||||||||||||||| |||||| ||||||||    
T  49768675 actaggtcatttattaagggacggatgaagtattatttttt 49768715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 51744755 - 51744791
Alignment:
Q  12 taggtcacttattaagggacggaggaagtagtatttt 48  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  51744755 taggtcacttatttagggacggagggagtagtatttt 51744791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 130
Target Start/End: Original strand, 52518758 - 52518794
Alignment:
Q  94 taatcaactatagttagttgatagataaactagagtt 130  Q
    |||||||||||||||||||||||  ||||||||||||    
T  52518758 taatcaactatagttagttgataagtaaactagagtt 52518794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 130
Target Start/End: Original strand, 52520600 - 52520636
Alignment:
Q  94 taatcaactatagttagttgatagataaactagagtt 130  Q
    |||||||||||||||||||||||  ||||||||||||    
T  52520600 taatcaactatagttagttgataagtaaactagagtt 52520636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 38878316 - 38878276
Alignment:
Q  1 attgggtctactaggtcacttattaagggacggaggaagta 41  Q
    ||||| || ||||||||||||||||||||||||||||||||    
T  38878316 attggatcaactaggtcacttattaagggacggaggaagta 38878276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 43
Target Start/End: Complemental strand, 900912 - 900884
Alignment:
Q  15 gtcacttattaagggacggaggaagtagt 43  Q
    |||||||||||||||||||||||||||||    
T  900912 gtcacttattaagggacggaggaagtagt 900884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 7460050 - 7460086
Alignment:
Q  10 actaggtcacttattaagggacggaggaagtagtatt 46  Q
    ||||||||| ||||| |||||||||||||||||||||    
T  7460050 actaggtcatttatttagggacggaggaagtagtatt 7460086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 9484817 - 9484857
Alignment:
Q  1 attgggtctactaggtcacttattaagggacggaggaagta 41  Q
    |||||||| ||||||||||||||||||| || |||||||||    
T  9484817 attgggtcaactaggtcacttattaaggaactgaggaagta 9484857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 130
Target Start/End: Complemental strand, 17403015 - 17402979
Alignment:
Q  94 taatcaactatagttagttgatagataaactagagtt 130  Q
    |||||||||||||||||||||||  ||||||||||||    
T  17403015 taatcaactatagttagttgataagtaaactagagtt 17402979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 38492083 - 38492043
Alignment:
Q  10 actaggtcacttattaagggacggaggaagtagtatttttt 50  Q
    ||||||||||||||| ||||||||||| |||| ||||||||    
T  38492083 actaggtcacttattcagggacggagggagtactatttttt 38492043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 130
Target Start/End: Original strand, 6222 - 6261
Alignment:
Q  91 gaataatcaactatagttagttgatagataaactagagtt 130  Q
    ||||||||||||||||||| ||||||| ||||||||||||    
T  6222 gaataatcaactatagttaattgataggtaaactagagtt 6261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 130
Target Start/End: Original strand, 39141 - 39180
Alignment:
Q  91 gaataatcaactatagttagttgatagataaactagagtt 130  Q
    ||||||||||||||||||||||||||  ||||||||||||    
T  39141 gaataatcaactatagttagttgataagtaaactagagtt 39180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 1749014 - 1748974
Alignment:
Q  1 attgggtctactaggtcacttattaagggacggaggaagta 41  Q
    |||||||| ||||||||||||||||| ||||||||| ||||    
T  1749014 attgggtcaactaggtcacttattaaaggacggagggagta 1748974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 130
Target Start/End: Original strand, 29758119 - 29758155
Alignment:
Q  94 taatcaactatagttagttgatagataaactagagtt 130  Q
    |||||||||||||||||||||||  ||||||||||||    
T  29758119 taatcaactatagttagttgataagtaaactagagtt 29758155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University