View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13974_high_13 (Length: 230)
Name: NF13974_high_13
Description: NF13974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13974_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 51 - 196
Target Start/End: Complemental strand, 2764692 - 2764547
Alignment:
| Q |
51 |
aaaggtggatatagttatctatattggggagttgacatcaataaaaaatcatacagttatcaacttctttcttttgcgttaatccttaggtttctaggag |
150 |
Q |
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| T |
2764692 |
aaaggtggatatagttatctatattggggagttgacatcaataaaaaatcatacagttatccacctttttcttttgcgttaatccttaggtttctaggag |
2764593 |
T |
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| Q |
151 |
aaagaaccatgtaagtcgaagtttgccggccatgaggtaagaatag |
196 |
Q |
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| T |
2764592 |
aaagaaccctataagtcgaagtttgccgtccatgaggtaagaatag |
2764547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 50 - 196
Target Start/End: Complemental strand, 2801846 - 2801699
Alignment:
| Q |
50 |
aaaaggtggatatagttatctatattggggagttgacatcaataaaaaat-catacagttatcaacttctttcttttgcgttaatccttaggtttctagg |
148 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||| |||| |
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| T |
2801846 |
aaaaggtggatatagttatctatattggggagttgacatcaataaaaaattcatacagttatcaacttttttcttttgtgttaatccttaggtttatagg |
2801747 |
T |
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| Q |
149 |
agaaagaaccatgtaagtcgaagtttgccggccatgaggtaagaatag |
196 |
Q |
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||||||||||||||||||||||||||| || ||||||||||| ||||| |
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| T |
2801746 |
agaaagaaccatgtaagtcgaagtttgtcgcccatgaggtaaaaatag |
2801699 |
T |
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