View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13974_high_4 (Length: 424)
Name: NF13974_high_4
Description: NF13974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13974_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 13 - 408
Target Start/End: Complemental strand, 21257747 - 21257343
Alignment:
| Q |
13 |
agaacaaaactaatccaaagagtatccgatacacaactaatcgaatagtatccatgcttcatagagtatgaaacattctcatgtggtattatgacactca |
112 |
Q |
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| T |
21257747 |
agaacacaactaatccaaagagtatccgatacacaactaatcgaatagtatccatgcttcatagagtatgaaacattctcatgtggtattatgacactca |
21257648 |
T |
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| Q |
113 |
tacaagaaaagacttccaccaagaatgtccttttgattttaaaaatcaataataaacaaatgagttagtaaacgcctaatgactcatgaagtctccatct |
212 |
Q |
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| T |
21257647 |
cacaagaaaagacttccaccaagaatgtccttttcattttaaaaatcaataataaacaaatgagttagtaaaagcctaatgactcatgaagactccatca |
21257548 |
T |
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| Q |
213 |
aaat-nnnnnnntggagattaagttcaacaatacaaaccaagaaattcagattatttcacacatatgaaccattaaac--------tcataatacttgca |
303 |
Q |
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| T |
21257547 |
atataaaaaaaatggagattaagttcaacaatacaaaccaagaaattctgattatttcacacatatgaaccattaaactcataaattcataatacttgca |
21257448 |
T |
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| Q |
304 |
aagaaattcaactgttttagttctctttccgttgcnnnnnnnctagcaattacacaaactttttggaaaagcatgagacatatcccttattctaacttac |
403 |
Q |
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||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
21257447 |
aagaaattcaactgttttagttctctttctgttgcaaaaaaactagcaattacacaaactttttggaaaagcataagacatatcccttattctaacttac |
21257348 |
T |
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| Q |
404 |
aaaac |
408 |
Q |
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| T |
21257347 |
aaaac |
21257343 |
T |
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