View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13974_low_10 (Length: 359)
Name: NF13974_low_10
Description: NF13974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13974_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 39 - 343
Target Start/End: Original strand, 2153547 - 2153850
Alignment:
| Q |
39 |
ttatttgcaatattgaattacctctatcacattcacaaagaaattaaataatgtaggcaatgctctccttccaacataaacttgtgcttccacatttata |
138 |
Q |
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| T |
2153547 |
ttatttgcaatattgaattacctctatcacattcacaaagaagttaaataatgtaggcaatgctctccttccaacataaacttgtgcttccacatttata |
2153646 |
T |
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| Q |
139 |
tcctcaaatctaacttcaattgttggaagttcaagtccaactctgtgcaaggtttagtttaataaaacaatataagaacaaatatttcaatcaaatcttc |
238 |
Q |
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| T |
2153647 |
tcctcaaatctaacttcaattgttggaagttcaagtccaactctgtgcaaggtttagtttaataaaacaatataagaacaaatatttcaatcaaatcttc |
2153746 |
T |
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| Q |
239 |
aaagtcaatgcttcataaataggagatttacaaaaagactaaacattataagtctcagttcactaaacttgttcnnnnnnncactatgaaaaggaatctt |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||| |
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| T |
2153747 |
aaagtcaatgcttcataaataggagatttacaaaaagactaaacattataaggctcagttcacaaaacttgttc-aaaaaacactatgaaaaggaatctt |
2153845 |
T |
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| Q |
339 |
gtaat |
343 |
Q |
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||||| |
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| T |
2153846 |
gtaat |
2153850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 184
Target Start/End: Original strand, 2166004 - 2166100
Alignment:
| Q |
88 |
aatgtaggcaatgctctccttccaacataaacttgtgcttccacatttatatcctcaaatctaacttcaattgttggaagttcaagtccaactctgt |
184 |
Q |
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|||| |||||| ||||| | ||||||||||||||||||||| |||||||||| ||||||||| ||||||| | |||||| |||||||||||||||| |
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| T |
2166004 |
aatgaaggcaaagctcttcctccaacataaacttgtgcttcaacatttatatgctcaaatctcacttcaactattggaatatcaagtccaactctgt |
2166100 |
T |
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