View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13974_low_11 (Length: 311)
Name: NF13974_low_11
Description: NF13974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13974_low_11 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 7 - 311
Target Start/End: Original strand, 3644879 - 3645177
Alignment:
| Q |
7 |
gtttggtcccataattggaacatgggttgataagttgacttaccaaaaggtgtgatcccaaatatattgctaacttcttctttgaacaaattgagatttt |
106 |
Q |
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| T |
3644879 |
gtttggtcccataattggaacatgggttgataagttgacttaccaaaaggtgtgatcccaaatatattgctaacttcttctttgaacaaatcaagatttt |
3644978 |
T |
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| Q |
107 |
agtttgcggttgcagttgcagttgcgtttcaattcttaatattgtaaagaattgtagtcaaatgtgattcacgttcgcgttgtggtcatacagacatcca |
206 |
Q |
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| T |
3644979 |
agtttgcggttg------cagttgcgtttcaattcttaatattgtaaagaattgtagtcaaatgtgattcacgttcgcgttgtggtcatacagacatcca |
3645072 |
T |
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| Q |
207 |
aaattttgatgtcatgtactgtataatttgggttttatgtctgtttttggtgtaaccgtagaagataaaaaagtaaacagagaaataaacatatatagtg |
306 |
Q |
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| T |
3645073 |
aagttttgatgtcatgtactgtataatttgggttttatgtctgtttttggtgtaaccgtagaagataaaaaagtaaacagagaaataaacatatatagtg |
3645172 |
T |
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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 3635447 - 3635507
Alignment:
| Q |
7 |
gtttggtcccataattggaacatgggttgataagttgacttaccaaaaggtgtgatcccaa |
67 |
Q |
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| T |
3635447 |
gtttggtcctttgattggaacatgggttgataagttgacttatgtgaaggtgtgatcccaa |
3635507 |
T |
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