View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13974_low_12 (Length: 302)

Name: NF13974_low_12
Description: NF13974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13974_low_12
NF13974_low_12
[»] chr2 (1 HSPs)
chr2 (18-302)||(38069429-38069715)


Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 302
Target Start/End: Original strand, 38069429 - 38069715
Alignment:
Q  18 gtaagatatgtgacttttgttaaaaaagaaaaggagagatgtgactaaaatcaagtactcctctgatttggatgattatgagaaaaagaagagaaattgg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38069429 gtaagatatgtgacttttgttaaaaaagaaaaggagagatgtgactaaaatcaagtactcctctgatttggatgattatgagaaaaagaagagaaattgg 38069528  T
Q  118 agatttcatctcattgattgggagattattttgataagagaatgccgtggattccatccctttttg--ctctctcgtaaattgagaagaaagagcataaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  38069529 agatttcatctcattgattgggagattattttgataagagaatgccgtggattccatccctttttgctctctctcgtaaattgagaagaaagagcataaa 38069628  T
Q  216 attagcaaagcacccactaatactctctcgattttaaaatgaatgtctctttagtaaaaacaaacgatgacagtctcatatcatatt 302  Q
    ||||| |||||| | ||||||| |  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38069629 attagtaaagcatcgactaatatttcctcggttttaaaatgaatgtctctttagtaaaaacaaacgatgacagtctcatatcatatt 38069715  T

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