View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13974_low_13 (Length: 269)
Name: NF13974_low_13
Description: NF13974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13974_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 254
Target Start/End: Original strand, 2801447 - 2801690
Alignment:
| Q |
10 |
ttctcaaaagggtctaaataattagaaacagcggtagtatgttactcatcaataaaagatggatttggcctaagtgattaacgagtttcaccaaagacgt |
109 |
Q |
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| T |
2801447 |
ttctcaaaagggtctaa-taattagaaacaggggtattatgttactcatcaataaaagatggatttggcctaagtgattaacgagtttcaccaaagacgt |
2801545 |
T |
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| Q |
110 |
gatgctccagagaaccgaattcgatttgtgggtgtaacaatttactcatcaataaaatatgaatttggcttcaagtggttaatgagcttcaccaaagacg |
209 |
Q |
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| T |
2801546 |
gatgctccagagaaccgaattcgatacgtggatgtaacaatttactcatcaataaaatatgaatttggcttcaagtggttaatgagcttcaccaaagacg |
2801645 |
T |
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| Q |
210 |
tgacattccagataatcgaattcgatttgtgggtgtaataattct |
254 |
Q |
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| T |
2801646 |
tgacatttcagataatcgaattcgatttgtgggtgtaacaattct |
2801690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 251
Target Start/End: Original strand, 2764472 - 2764535
Alignment:
| Q |
188 |
ttaatgagcttcaccaaagacgtgacattccagataatcgaattcgatttgtgggtgtaataat |
251 |
Q |
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| T |
2764472 |
ttaatgagatttatcaaagacatgacattccagataattgaatacgacatgtgggtgtaataat |
2764535 |
T |
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