View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13974_low_2 (Length: 699)
Name: NF13974_low_2
Description: NF13974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13974_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 604; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 10 - 681
Target Start/End: Original strand, 43054798 - 43055478
Alignment:
| Q |
10 |
tccaagaatatatttagtgacaattctttacgttatggatccagaatatgatagttgctaggtcaaatacagttgttattattattattgctgttattat |
109 |
Q |
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| T |
43054798 |
tccaacaaaatatttagtgacaattctttacgttatggatccagaatatgatagttgctaggtcaaatacagttgttattattattattactgttattat |
43054897 |
T |
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| Q |
110 |
ttctggcgtccagacgggcacaattggctagggatgcatatgtttagtccctagaaaattacccagtttcagttatgtttatgacttctgtataaatgta |
209 |
Q |
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| T |
43054898 |
ttctggcgtccagacgggcacaattggctagggatgcatatgtttagtccctagaaaattacccagtttcggttatgtttatgacttctgtataaatgta |
43054997 |
T |
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| Q |
210 |
tactgctgatcatgttcaatgtttatgttttctgttgcaggaaaaagttgtttgtctcacttgcggcgatataggttttccagaggtccgggttttttgc |
309 |
Q |
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| T |
43054998 |
tactgctgatcatgttcaatgtttatgttttctgttgcaggaaaaagttgtttgtctcacttgcggcgatataggttttccagaggtcagggttttttgc |
43055097 |
T |
|
| Q |
310 |
aacaattgcaaggattgtgctcttcataggtgcttatacnnnnnnngaagttatattattatactagagtactgagagtatatattctttagtttggaca |
409 |
Q |
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| T |
43055098 |
aacaattgcaaggattgtgctcttcataggtgcttatactttttttgaagttatattattatactagagtactgagagtatatattctttagtttggaca |
43055197 |
T |
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| Q |
410 |
atccaaagagtaattgaaatgatactacttgttgatatgttttctttatacgaaatatatgtccttttcgattttagtagaagttcttttagaacaatga |
509 |
Q |
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| T |
43055198 |
atccaaagagtaattgaaatgatactacttgttgatatgttttctttatacgaaatatatgtccttttcgattttagtagaagttcttttagaacaatga |
43055297 |
T |
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| Q |
510 |
taggctttgtgcatcgctcttgacgcgtttctctatattcccatatggatgtttacaaaatttctat---------aggtgaggtttgggagtgttgcta |
600 |
Q |
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| T |
43055298 |
taggctttgtgcatcgctcttgacgcgtttctttatattcccatatggatgtttacaaaatttctataggtgatgaaggtgaggtttgggagtgttgcta |
43055397 |
T |
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| Q |
601 |
tccattgatattgttcggtttgggtaaaccaagagattactgaatagataaccaacactattgtgttaatatcatcgactt |
681 |
Q |
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| T |
43055398 |
tccattgatattgttcggtttgggtaaaccaagagattactgaatagataaccaacactattgtgttaatatcatcgactt |
43055478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 514 - 629
Target Start/End: Original strand, 14524979 - 14525093
Alignment:
| Q |
514 |
ctttgtgcatcgctcttgacgcgtttctctatattcccatatggatgtttacaaaatttctataggtgaggtttgggagtgttgctatccattgatattg |
613 |
Q |
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| T |
14524979 |
ctttgagcattgctctagatgcatttctttatattcccatatggatgtttacaaaatttcta-aggtgagatttaggagtgttgttatccattgatatag |
14525077 |
T |
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| Q |
614 |
ttcggtttgggtaaac |
629 |
Q |
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| T |
14525078 |
tcgggtttgggtaaac |
14525093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 275 - 340
Target Start/End: Complemental strand, 43186084 - 43186018
Alignment:
| Q |
275 |
gcgatataggttttccagaggtccg-ggttttttgcaacaattgcaaggattgtgctcttcataggt |
340 |
Q |
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| T |
43186084 |
gcgatgtaggttttccagaggttagaggttttttgcaacaagtgccaggcttgtgctcttcacaggt |
43186018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 447
Target Start/End: Original strand, 14524909 - 14524966
Alignment:
| Q |
390 |
tatattctttagtttggacaatccaaagagtaattgaaatgatactacttgttgatat |
447 |
Q |
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| T |
14524909 |
tatattcttaagtttggacaatctaaagagcaaccagaatgatactacttgttgatat |
14524966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 374 - 440
Target Start/End: Original strand, 44804643 - 44804708
Alignment:
| Q |
374 |
tagagtactgagagtatatattctttagtttggacaatccaaagagtaattgaaatgatactacttg |
440 |
Q |
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| T |
44804643 |
tagagtactgagagtgtatagtctt-aggttgaacgatccaaagagtaattggaatgatactacttg |
44804708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 295
Target Start/End: Original strand, 44804432 - 44804469
Alignment:
| Q |
258 |
tgtttgtctcacttgcggcgatataggttttccagagg |
295 |
Q |
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| T |
44804432 |
tgtttgtctcacttgcggtgatgtaggttttccagagg |
44804469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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