View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13974_low_3 (Length: 496)
Name: NF13974_low_3
Description: NF13974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13974_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 460; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 17 - 480
Target Start/End: Original strand, 48363723 - 48364186
Alignment:
| Q |
17 |
aatgttacttgtccaaattcgcaagaacaatcagctgttacttcaccttataggaactcttattcacctagaacacctttaagggcatctccaggttctt |
116 |
Q |
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| T |
48363723 |
aatgttacttgtccaaattcgcaagaacaatcagctgttacttcaccttataggaactcttattcacctagaacacctttaagggcatctccaggttctt |
48363822 |
T |
|
| Q |
117 |
cttccggtgaagatcctgacgaagtcatttataggaaagttgaatttagtaaatcccagcataagagactagcgactaaggttttgatcgaattgttcat |
216 |
Q |
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| T |
48363823 |
cttccggtgaagatcctgacgaagtcatttataggaaagttgaatttagtaaatcccagcataagagactagcgactaaggttttgatcgaattgttcat |
48363922 |
T |
|
| Q |
217 |
gtttgtgtgcgttgtgggtgtcttgttggctagcttaacaattgaggaactgaaaaggatacatatttggagtttagggctttggaggtggtgtatgctt |
316 |
Q |
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| T |
48363923 |
gtttgtgtgcgttgtgggtgtcttgttggctagcttaacaattgaggaactgaaaaggatacatatttggagtttagggctttggaggtggtgtatgctt |
48364022 |
T |
|
| Q |
317 |
gtgatggtgacattttttggcttgttagttaccaaatggttcatgcacattgttgttttctcgattgaaatgaactttttgttgaagaaaaaggtgcttt |
416 |
Q |
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| T |
48364023 |
gtgatggtgacattttttggcttgttagttaccaaatggttcatgcacattgttgttttcttgattgaaatgaactttttgttgaagaaaaaggtgcttt |
48364122 |
T |
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| Q |
417 |
attttgtccatgggttgaagcaatgtgtccaggttttcatttggatcagtttggttctccttac |
480 |
Q |
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| T |
48364123 |
attttgtccatgggttgaagcaatgtgtccaggttttcatttggatcagtttggttctccttac |
48364186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 83 - 477
Target Start/End: Complemental strand, 48398736 - 48398345
Alignment:
| Q |
83 |
cctagaacacctttaagggcatctccaggttcttcttccggtgaagatcctgacgaagtcatttataggaaagttgaatttagtaaatcccagcataaga |
182 |
Q |
| |
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|||||||||||||| | | ||||||||||| || || || || |||||||| ||| ||||||| | ||||||||||||||||||| | ||| ||||| |
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| T |
48398736 |
cctagaacacctttgatgacatctccaggtcctgct---ggcgaggatcctgatgaaatcatttacaagaaagttgaatttagtaaaggcaagcgtaaga |
48398640 |
T |
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| Q |
183 |
gactagcgactaaggttttgatcgaattgttcatgtttgtgtgcgttgtgggtgtcttgttggctagcttaacaattgaggaactgaaaaggatacatat |
282 |
Q |
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| T |
48398639 |
gactaactactaaggttttgatcgagttgttcgtgtttgtgtgcatcacgggtagcttgttggctagtttaacagttgaggaactaaaaaggacggagat |
48398540 |
T |
|
| Q |
283 |
ttggagtttagggctttggaggtggtgtatgcttgtgatggtgacattttttggcttgttagttaccaaatggttcatgcacattgttgttttctcgatt |
382 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||| ||||||| |||| |
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| T |
48398539 |
ttggagtttggggctttggaggtggtgtatgcttgtgatggtgacattttgtggcatgttagttaccaaatggttcacgcacattgtggttttcttgatt |
48398440 |
T |
|
| Q |
383 |
gaaatgaactttttgttgaagaaaaaggtgctttattttgtccatgggttgaagcaatgtgtccaggttttcatttggatcagtttggttctcct |
477 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||| |||||| |||||||||||| |
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| T |
48398439 |
gaaatgaactttttattgaagaaaaaggtgctttattttgttcatggactgaagaaatgtatccaggttttcacttggattgctttggttctcct |
48398345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 83 - 477
Target Start/End: Original strand, 48383405 - 48383796
Alignment:
| Q |
83 |
cctagaacacctttaagggcatctccaggttcttcttccggtgaagatcctgacgaagtcatttataggaaagttgaatttagtaaatcccagcataaga |
182 |
Q |
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|||||||||||||| | ||||||||||||| || || || || |||| ||| ||| |||||| ||||||||||||| |||| | | ||| |||| |
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| T |
48383405 |
cctagaacacctttgatggcatctccaggtcctgct---ggcgaggatcttgatgaaatcattttcaggaaagttgaatccagtagaggcaagcgaaaga |
48383501 |
T |
|
| Q |
183 |
gactagcgactaaggttttgatcgaattgttcatgtttgtgtgcgttgtgggtgtcttgttggctagcttaacaattgaggaactgaaaaggatacatat |
282 |
Q |
| |
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||||| | || ||||| ||||| ||||||||| | ||||| ||| | | |||| |||||||||||| ||||| ||||| |||||| ||||| | | | |
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| T |
48383502 |
gactaacaacaaaggtcttgattgaattgttcgtttttgtatgcatcgcgggtagcttgttggctagtttaacggttgagaaactgagaaggacagagct |
48383601 |
T |
|
| Q |
283 |
ttggagtttagggctttggaggtggtgtatgcttgtgatggtgacattttttggcttgttagttaccaaatggttcatgcacattgttgttttctcgatt |
382 |
Q |
| |
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|||||||||| |||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
48383602 |
ttggagtttaaggctttggaggtattgtatgcttgtgatggtgacattttgtggcatgttagttaccaaatggttcatgcacattcttgttttcttgatt |
48383701 |
T |
|
| Q |
383 |
gaaatgaactttttgttgaagaaaaaggtgctttattttgtccatgggttgaagcaatgtgtccaggttttcatttggatcagtttggttctcct |
477 |
Q |
| |
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|||||||||||||||||||||||||| || ||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
48383702 |
gaaatgaactttttgttgaagaaaaaagtactttattttgttcatggattgaagaaatgtgtccaggttttcatttggatcagtttggttctcct |
48383796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 48383267 - 48383323
Alignment:
| Q |
17 |
aatgttacttgtccaaattcgcaagaacaatcagctgttacttcaccttataggaac |
73 |
Q |
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|||||||||| | |||||| ||||||||| | |||||||| |||||||||||||||| |
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| T |
48383267 |
aatgttacttattcaaatttgcaagaacatttagctgttagttcaccttataggaac |
48383323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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