View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13974_low_4 (Length: 476)
Name: NF13974_low_4
Description: NF13974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13974_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 189 - 461
Target Start/End: Original strand, 47001034 - 47001306
Alignment:
| Q |
189 |
ataaaaagttactgtgaatgatgaaatctaagagtgtaatggacttgtcaaaattgttacagggattgaaattgttgagaggctttccaccatggggatt |
288 |
Q |
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| T |
47001034 |
ataaaaatttactgtgaatgatgaaatctaagagtgtaatggacttgtcaaaattgctacagggattgaaattgttgagaggctttccaccatggggatt |
47001133 |
T |
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| Q |
289 |
gcagtcaatttggtgacatatctgatgggagtcatgcatatgccaagttcaactgcagctaatactgtgactgacttcatgggcacatcatttctccttt |
388 |
Q |
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| T |
47001134 |
gcagtcaatttggtgacatatctgatgggagtcatgcatatgccaagttcaactgcagctaatactgtgactgacttcatgggcacatcatttctccttt |
47001233 |
T |
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| Q |
389 |
gtttgcttggaggttttctagcagattccttccttggaagatataaaacaattggaatcttttctgcaataca |
461 |
Q |
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| T |
47001234 |
gtttgcttggaggttttctagcagattccttccttggaagatataaaacaattggaatcttttctgcaataca |
47001306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 47000880 - 47001034
Alignment:
| Q |
8 |
ggttgggactaaaattacaataaatgtgaaaataaagacaccaaaaagttcgattgaggactattttcgtgaatttaaataaaataggagaaccattaag |
107 |
Q |
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| T |
47000880 |
ggttgggactaaaattacaataaatgtgaaaataaagacaccaaaaagttcgattgaggactattttcgtgaatttaa-taaaataggagaaccattaag |
47000978 |
T |
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| Q |
108 |
cataatataagagatcaattttatcttcttaagaagaggatgtgaataaataaata |
163 |
Q |
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| T |
47000979 |
cataatataagagatcaattttatcttcttaagaagaggatgtgaataaataaata |
47001034 |
T |
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