View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13974_low_6 (Length: 415)
Name: NF13974_low_6
Description: NF13974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13974_low_6 |
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| [»] scaffold0115 (1 HSPs) |
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| [»] scaffold0050 (1 HSPs) |
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Alignment Details
Target: scaffold0115 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 401
Target Start/End: Original strand, 32100 - 32482
Alignment:
| Q |
18 |
gaaaccaaaaatttcctttctcttctctatgtactttgatctagggacaaaagcgatggacgaatgctttcttcaaatcatcacaagtacgtatggtggc |
117 |
Q |
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| T |
32100 |
gaaaccaaaaatttcctttctcttctctatgtactttgatctaggga-aaaagcgacggaggaatgctttcttcaaatcattacaagtaaatatggtggc |
32198 |
T |
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| Q |
118 |
acttagaagtgtgttgacccaatcccgtacacgtccacttagagaatatacaaacaaacatagtcttttctcgaactatgaaactctagatatgttgatg |
217 |
Q |
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| T |
32199 |
acttagaagtgtgttgacccaatcctctacacgttcacttagagaatatacaaacaaacatagtcttttctcgaagtatgaaactccagataggttgatg |
32298 |
T |
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| Q |
218 |
gtgttgcatgcttttaagaaaatatgttagatgagcattacagtcttatgatttcttacttgataattggttctcccttagagcggcgagaacttcattt |
317 |
Q |
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| T |
32299 |
gtgttgcatgcttttaagaaaatgtgttagatgagcattacagtcttttgattccgtacttgataattggttctcccttagagcggcgagaacttcattt |
32398 |
T |
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| Q |
318 |
tttatatcaaaaagaactagattttctggttgaaacccttgggaaacttcatcaatatcgtcgagtcttccaaaatctcctagt |
401 |
Q |
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| T |
32399 |
tttatgtcaaaaagaactagattttccggttgaaacccttgggtaacttcatcaatgtcgttgagtcttccataatcacctagt |
32482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 173
Target Start/End: Original strand, 25131700 - 25131800
Alignment:
| Q |
73 |
atggacgaatgctttcttcaaatcatcacaagtacgtatggtggcacttagaagtgtgttgacccaatcccgtacacgtccacttagagaatatacaaac |
172 |
Q |
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| T |
25131700 |
atggaggaatgctttcttcagatcatcccaagtagctatggtgccacttggaagtgcgttgatccaatccttttctcgtcaacttggagaatagacaaac |
25131799 |
T |
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| Q |
173 |
a |
173 |
Q |
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| T |
25131800 |
a |
25131800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 27874 - 27912
Alignment:
| Q |
19 |
aaaccaaaaatttcctttctcttctctatgtactttgat |
57 |
Q |
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|||| ||||| |||||||||||||||||||||||||||| |
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| T |
27874 |
aaacaaaaaaattcctttctcttctctatgtactttgat |
27912 |
T |
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