View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13974_low_7 (Length: 378)
Name: NF13974_low_7
Description: NF13974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13974_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 11 - 360
Target Start/End: Complemental strand, 24208852 - 24208503
Alignment:
| Q |
11 |
cacagaccacaccaaaccttttcatatgtgacataacaaattccgcttcttcaacattccaattcttctgataaagcctcattaacatcccgaacgtcgc |
110 |
Q |
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| T |
24208852 |
cacaaaccacactaaaccttttcatatgtgacataacaaattccgcttcttcaacattccaattcttctgataaagcctcattaacatcccgaacgtcgc |
24208753 |
T |
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| Q |
111 |
gacattcggggtaacgttacaatctaacatcatacgaaaccatttagaagctagttctactaacccgcgttttgaacaagcgtagatgagtgtgttgaaa |
210 |
Q |
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| T |
24208752 |
cacattcggggtaacgttacaatctaacatcatacgaaaccatttagaagttaattttactaacccgcgttttgaagaagcgtaaatgagtgtgttgaaa |
24208653 |
T |
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| Q |
211 |
atttcataatttaattgtggttcggaatccgaagctaagatgattttacgaaggagattttcagcggtttcccagtcttgttttttggttaatgcacgaa |
310 |
Q |
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| T |
24208652 |
atttgataagttaattgtggttcggaatccgaagctaagatgattttacgaaggagattttcagcggtttcccagtcttgttttttggttaatgcacgaa |
24208553 |
T |
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| Q |
311 |
tggaggcgtgggtgattttgattggttggtttgggttttgatgtgtgatt |
360 |
Q |
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| T |
24208552 |
tggaggcgtgggtgattttgattggttggtttgggttttgatgtgtgatt |
24208503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 156; Significance: 8e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 152 - 353
Target Start/End: Complemental strand, 16841988 - 16841783
Alignment:
| Q |
152 |
atttagaagctagttctactaacccgcgttttgaacaagcgtagatgagtgtgttgaaaatttcataatttaattgtggttcg---gaatccgaagctaa |
248 |
Q |
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| T |
16841988 |
atttagaagccagttttactaacccgcgttttgaacaagcgtagatgagtgtgctgaaaatttggtaagttaattgtggttcgtatgaatccgaagctaa |
16841889 |
T |
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| Q |
249 |
gatgattttacgaaggagattttcagc-ggtttcccagtcttgttttttggttaatgcacgaatggaggcgtgggtgattttgattggttggtttgggtt |
347 |
Q |
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| T |
16841888 |
gatgattttacaaaggagattttcagcaggtttcccagtcttgttttttggttaatgcacgaatggaggcgtgggtgattttgattggttggtttgggtt |
16841789 |
T |
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| Q |
348 |
ttgatg |
353 |
Q |
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|||||| |
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| T |
16841788 |
ttgatg |
16841783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 16842066 - 16842004
Alignment:
| Q |
48 |
aaattccgcttcttcaacattccaattcttctgataaagcctcattaacatcccgaacgtcgc |
110 |
Q |
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| T |
16842066 |
aaattccgcttcttcaacattccaattcttctggtaaagcctcattaacatcctgaacgtcgc |
16842004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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