View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13974_low_9 (Length: 362)
Name: NF13974_low_9
Description: NF13974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13974_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 20 - 299
Target Start/End: Original strand, 734460 - 734739
Alignment:
| Q |
20 |
gcagccttatcttcctcgacaattttttcctcctcaggagcaattgggatcggagaaagaagctcaaccttcctgtgactcttcttcttaaccctctcca |
119 |
Q |
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|||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||| |
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| T |
734460 |
gcagccttctcttcctcagcaggtttttcctcctcaggagcaattgggatcggagaaagaagctcaaccttcctatgactcttcttctgaaccctttcca |
734559 |
T |
|
| Q |
120 |
aaaccttcaatggctccgctttctctcctttcacaaccaccgtatgagacttgcaatcagttatcacttcttcaacacctggaaaatctttcaacgaccg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
734560 |
aaaccttcaatggctccgctttctctcctttcacaaccaccgtatgagacttgcaatcagctatcacttcttcaacacctggaaaatctttcaacgaccg |
734659 |
T |
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| Q |
220 |
acgaactttccgagcacagctttcacaatgcatgaaaactttcagcaaaatctctgccggaggtggcgcaggaacagcag |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
734660 |
acgaactttccgagcacagctttcacaatgcatgaaaactttcagcaaaatctctgccggaggtggcgcaggaacagcag |
734739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 20 - 299
Target Start/End: Original strand, 45390852 - 45391131
Alignment:
| Q |
20 |
gcagccttatcttcctcgacaattttttcctcctcaggagcaattgggatcggagaaagaagctcaaccttcctgtgactcttcttcttaaccctctcca |
119 |
Q |
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|||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||| |||| |
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| T |
45390852 |
gcagccttctcttcctcagcaggtttttcctcctcaggagcaattgggatcggagaaagaagctcaacctttctatgactcttcttctgaaccctttcca |
45390951 |
T |
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| Q |
120 |
aaaccttcaatggctccgctttctctcctttcacaaccaccgtatgagacttgcaatcagttatcacttcttcaacacctggaaaatctttcaacgaccg |
219 |
Q |
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| T |
45390952 |
aaaccttcaatggctccgctttctctcctttcacaaccaccgtatgagacttgcaatcagttatcacttcttcaacacctggaaaatctttcaacgaccg |
45391051 |
T |
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| Q |
220 |
acgaactttccgagcacagctttcacaatgcatgaaaactttcagcaaaatctctgccggaggtggcgcaggaacagcag |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45391052 |
acgaactttccgagcacagctttcacaatgcatgaaaactttcagcaaaatctctgccggaggtggcgcaggaacagcag |
45391131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 20 - 282
Target Start/End: Original strand, 45386483 - 45386745
Alignment:
| Q |
20 |
gcagccttatcttcctcgacaattttttcctcctcaggagcaattgggatcggagaaagaagctcaaccttcctgtgactcttcttcttaaccctctcca |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
45386483 |
gcagccttatcttcctcgacaattttttcctcctcaggagcaattgggatcggagaaagaagctcaaccttcctgtgactcttcttctgaaccctctcca |
45386582 |
T |
|
| Q |
120 |
aaaccttcaatggctccgctttctctcctttcacaaccaccgtatgagacttgcaatcagttatcacttcttcaacacctggaaaatctttcaacgaccg |
219 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45386583 |
aaaccttcaatggctctgctttctctcctttcacaaccaccatatgagatttgcaatcagttatcacttcttcaacacctggaaaatctttcaatgaccg |
45386682 |
T |
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| Q |
220 |
acgaactttccgagcacagctttcacaatgcatgaaaactttcagcaaaatctctgccggagg |
282 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
45386683 |
acgaactttccgagcacagccttcacaatgcatgaaaactctcagcaaaatctctgctggagg |
45386745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 63 - 207
Target Start/End: Original strand, 40577944 - 40578088
Alignment:
| Q |
63 |
ttgggatcggagaaagaagctcaaccttcctgtgactcttcttcttaaccctctccaaaaccttcaatggctccgctttctctcctttcacaaccaccgt |
162 |
Q |
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||||||||||||||||||||||||| | || ||||||||| ||| ||| || || | |||||||||||| |||||||| |||||||| |||| ||| | |
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| T |
40577944 |
ttgggatcggagaaagaagctcaacttgtctatgactcttcctctgaactctttcaagaaccttcaatggatccgctttttctcctttaacaataacctt |
40578043 |
T |
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| Q |
163 |
atgagacttgcaatcagttatcacttcttcaacacctggaaaatc |
207 |
Q |
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| T |
40578044 |
gtgagatttgcaatcagtaaccacatcttcaacccctgaaaaatc |
40578088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 266
Target Start/End: Original strand, 40578165 - 40578235
Alignment:
| Q |
196 |
acctggaaaatctttcaacgaccgacgaactttccgagcacagctttcacaatgcatgaaaactttcagca |
266 |
Q |
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|||||||||| |||| | || ||||||||||| |||||||| | ||||||||||||||| ||||| |||| |
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| T |
40578165 |
acctggaaaacctttgagtgaacgacgaactttacgagcacaaccttcacaatgcatgaagactttaagca |
40578235 |
T |
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