View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_high_11 (Length: 524)
Name: NF13975_high_11
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 12 - 506
Target Start/End: Original strand, 7172601 - 7173085
Alignment:
| Q |
12 |
atgaaagaaaaagcccattttgaactacaaacaagaacaagaacatatgtccacaccacacaatctcaaattctcatatctaatctcatctgcnnnnnnn |
111 |
Q |
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| T |
7172601 |
atgaaagaaaaagcccattttgaactacaaacaagaacaagaacatatgtccacaccacacaatctcaaattctcatatctaatctcatctgcaaaaaaa |
7172700 |
T |
|
| Q |
112 |
tggcgcagtgcattaccaatacctttattcaaggaaaaccattccttccacttcccacaaaaaacgtagtaaccaaccacttccttaaaatttccaatta |
211 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7172701 |
tggcgcagtgcattaccaatacctttgttcaaggaaaaccattccttccacttcccacaaaaaacgtagtaaccaaccacttccttaaaatttccaatta |
7172800 |
T |
|
| Q |
212 |
ttcatattattgtttctgtattaaactaaccaacatgnnnnnnnnnngtagttgcagaatcaacaaggnnnnnnngtgggaaatttcggagtgtattgta |
311 |
Q |
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|| |||||||||||||||||||||||||| |||||||||||||||| |||| ||||| ||||||||||||||||||| |
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| T |
7172801 |
tt---------gtttctgtattaaactaaccaacatgttttttttt-gtagttgcagaatcaaaaaggaaaaaaagtgggcaatttcggagtgtattgta |
7172890 |
T |
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| Q |
312 |
agaagaaagacatacacccaaaattccatgaagatgctaaggtttactgtaataacgagcttgtgatgacaactggtggaacccagaaagagtatgtggt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7172891 |
agaagaaagacatacacccaaaattccatgaagatgctaaggtttactgtaataacgagcttgtgatgacaactggtggaacccagaaagagtatgtggt |
7172990 |
T |
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| Q |
412 |
tgatgtttggtctgggaaccatccattttacctaggtaacaggtctgctcttatggtgagtgatgatcaggtggagaagtttcgtaagaagttcg |
506 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7172991 |
tgatgtttggtctgggaaccatccattttacctaggtaacaggtctgctcttatggtgagtgatgatcaggtggagaagtttcgtaagaagttcg |
7173085 |
T |
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