View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_high_12 (Length: 522)
Name: NF13975_high_12
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 495; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 18 - 520
Target Start/End: Complemental strand, 51767572 - 51767070
Alignment:
| Q |
18 |
atgatgtggtaatgatttggcaagtgccaagagtcggcatcaaagaccttacacaaacaccagatacaatacctaataatttaacaaaataaaaatgatc |
117 |
Q |
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| T |
51767572 |
atgatgtggtaatgatttggcaagtgccaagagtcggcatcaaagaccttacacaaacaccagatacaatacctaataatttaacaaaataaaaatgatc |
51767473 |
T |
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| Q |
118 |
gaatagaaccacatatatcggtgtcatgcttgtgtcgaacaacaatatgtatccaactctaaacatgccttcaatctaaagtgtccgtgctacataggtc |
217 |
Q |
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| T |
51767472 |
gaatagaaccacatatatcggtgtcatgcttgtgtcgaacaacaatatgtatccaactctaaacatgccttcaatctaaagtgtccgtgctacataggtc |
51767373 |
T |
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| Q |
218 |
agtcgtcaatgcacaaagtcaatagctggcctcaggccagattttaatttctgatccatttctagcttctgccaaacacaatttcacgttcaataactgt |
317 |
Q |
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| T |
51767372 |
agtcgtcaatgcacaaagtcaatagctggcctcaggccagattttaatttctgatccatttctagcttctgccaaacacaatttcacgttcaataactgt |
51767273 |
T |
|
| Q |
318 |
atccttattaccatagccctgtcagaaagctaactttatgatacataacttgtatgcatggcctccctctaaaaacatggtccatttggaaaatacaata |
417 |
Q |
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| T |
51767272 |
atccttattaccatagccctgtcagaaagctaactttatgatacataacttgtatgcatggcctccctctaaaaacatggtccatttggaaaatacaata |
51767173 |
T |
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| Q |
418 |
gtcaatgtagaatgatgtggatgcacatggaaatgattttgtgattcccttctccaagaacatgggtgctccatctcttaagatacaatgtctgtgctcc |
517 |
Q |
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| T |
51767172 |
gtcaatgtagaatgatgtggatgcacatggaaatgattttgtgattcccttctccaagaacatgggtgctccatctcttaagatacaatgtttgtggtcc |
51767073 |
T |
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| Q |
518 |
tcc |
520 |
Q |
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||| |
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| T |
51767072 |
tcc |
51767070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 44 - 314
Target Start/End: Complemental strand, 51755810 - 51755530
Alignment:
| Q |
44 |
ccaagagtcggcatcaaagaccttacacaaacaccagatacaatacc--taataatttaacaaaataaaaatgatcgaatagaaccacatatat------ |
135 |
Q |
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| T |
51755810 |
ccaagagtcggcatcgaagcacttgcacaaacac----tacaataccggtaataatt-aagaaaataaaaatgattgaatagaaccacatatatatcggt |
51755716 |
T |
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| Q |
136 |
cggtgtcatgcttgtgtcgaacaacaatatgtatccaactctaaacatgccttcaatctaaagtgtccgtgctacataggtcagtcgtcaatgcacaaag |
235 |
Q |
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| T |
51755715 |
cggtgtcttgcttgtgttcaacaacagtatgtatccgattctgggcacggcttcaatttaatgtatcggtgctacataggtcagccgtcaacacacaatg |
51755616 |
T |
|
| Q |
236 |
tcaatagctggcctcaggcca-------gattttaatttctgatccatttctagcttctgccaaacacaatttcacgttcaataac |
314 |
Q |
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|||||||| |||| |||||| ||||||| ||||||| |||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
51755615 |
tcaatagccagccttaggccaactgccagattttagtttctgacccatttctagtttctgccaaacacaatttcacgttccataac |
51755530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 415
Target Start/End: Complemental strand, 51755455 - 51755411
Alignment:
| Q |
371 |
atgcatggcctccctctaaaaacatggtccatttggaaaatacaa |
415 |
Q |
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||||| ||||||||| | |||||| |||||||||||||||||||| |
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| T |
51755455 |
atgcaaggcctccctttgaaaacaaggtccatttggaaaatacaa |
51755411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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