View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13975_high_23 (Length: 476)

Name: NF13975_high_23
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13975_high_23
NF13975_high_23
[»] chr8 (5 HSPs)
chr8 (74-196)||(26798885-26799007)
chr8 (322-457)||(26798580-26798715)
chr8 (80-204)||(27518518-27518641)
chr8 (1-78)||(26799061-26799138)
chr8 (142-213)||(15065268-15065341)
[»] chr5 (2 HSPs)
chr5 (74-234)||(23010721-23010880)
chr5 (101-133)||(11983623-11983655)
[»] chr7 (1 HSPs)
chr7 (107-219)||(15028788-15028898)
[»] chr3 (1 HSPs)
chr3 (81-184)||(38363574-38363677)
[»] chr4 (1 HSPs)
chr4 (186-218)||(6087851-6087883)
[»] chr2 (1 HSPs)
chr2 (23-63)||(28581450-28581490)


Alignment Details
Target: chr8 (Bit Score: 115; Significance: 3e-58; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 74 - 196
Target Start/End: Complemental strand, 26799007 - 26798885
Alignment:
Q  74 taggacctttttaccctcactttaaattttctctttttaatattagtggatgcatttaatctatcactaactttttgtgagggcatatttaccaaaacaa 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  26799007 taggacctttttaccctcactttaaattttctctttttaatattagtggatgcatttaatctatcactaactttttatgagggcatattcaccaaaacaa 26798908  T
Q  174 taaaaagataacaacaattaata 196  Q
    |||||||||||||||||||||||    
T  26798907 taaaaagataacaacaattaata 26798885  T

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Target: chr8; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 322 - 457
Target Start/End: Complemental strand, 26798715 - 26798580
Alignment:
Q  322 ttgaaagagactgaaaaattgagtgctaagttttggaggtatgtgaatatttgggggatatgtgtggtgcatttttgtcctcccaccctacagaaacgcc 421  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||    
T  26798715 ttgaaagagactgaaaaattgagtgctaagttttggaggtatgtgaatatttgggggaaatatgtggtgca-ttttgtcctcccaccctacagaaacgcc 26798617  T
Q  422 t-aatgaaatttcacttgctatatttaatccatacca 457  Q
    | |||||||||||||||||||||||||||| ||||||    
T  26798616 tgaatgaaatttcacttgctatatttaatctatacca 26798580  T

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Target: chr8; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 80 - 204
Target Start/End: Original strand, 27518518 - 27518641
Alignment:
Q  80 ctttttaccctcactttaaattttctctttttaatattagtggatgcatttaatctatcactaactttttgtgagggcatatttaccaaaacaataaaaa 179  Q
    ||||||||| ||| ||||| |||| ||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||| |||||||||||||    
T  27518518 ctttttaccttcattttaatttttgtctttttaatattagtggatgcatttaatatatcac-aactttttatgagggcatatttactaaaacaataaaaa 27518616  T
Q  180 gataacaacaattaataacttcatt 204  Q
     |||||| ||||||||||| |||||    
T  27518617 aataacagcaattaataacctcatt 27518641  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 26799138 - 26799061
Alignment:
Q  1 gaatgtcaattatattatcaaaagggttaatagtattttttccctgtataataggtcatttccaatttacccctagga 78  Q
    |||||||||||||||||||||||| ||||||||| ||||| |||  ||||||||||||||||   |||||||||||||    
T  26799138 gaatgtcaattatattatcaaaagagttaatagtttttttccccgatataataggtcatttctggtttacccctagga 26799061  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 213
Target Start/End: Complemental strand, 15065341 - 15065268
Alignment:
Q  142 aactttttgtgagggcatatttaccaaaacaata--aaaagataacaacaattaataacttcattggttttgat 213  Q
    |||||||| | ||||||||||| |||||||||||  |||| | || ||||| ||||||||||||||||||||||    
T  15065341 aactttttatcagggcatatttgccaaaacaataaaaaaaaaaaataacaactaataacttcattggttttgat 15065268  T

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Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 74 - 234
Target Start/End: Original strand, 23010721 - 23010880
Alignment:
Q  74 taggacctttttaccctcactttaaattttctctttttaatattagtggatgcatttaatctatcactaactttttgtgagggcatatttaccaaaacaa 173  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | | || ||||| ||||| ||||||| |||||||||    
T  23010721 taggacttttttaccctcactttaaattttgtctttttaatattagtggatgcatttaatctaacgcaaa-tttttatgaggacatatttgccaaaacaa 23010819  T
Q  174 taaaaagataacaacaattaataacttcattggttttgatgttttttgttttcttctctta 234  Q
    ||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||    
T  23010820 taaaaagataacaactattaataacctcattggtttttatgttttttgttttcttctctta 23010880  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 101 - 133
Target Start/End: Complemental strand, 11983655 - 11983623
Alignment:
Q  101 tttctctttttaatattagtggatgcatttaat 133  Q
    ||||||||||||||||||||||||| |||||||    
T  11983655 tttctctttttaatattagtggatgtatttaat 11983623  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 107 - 219
Target Start/End: Original strand, 15028788 - 15028898
Alignment:
Q  107 tttttaatattagtggatgcatttaatctatcactaactttttgtgagggcatatttaccaaaacaataaaaagataacaacaattaataacttcattgg 206  Q
    |||||||||||||||||| |||||||| |||||| || ||||  |||||| ||||||    ||| ||||||||||||||||||| ||||||| ||||| |    
T  15028788 tttttaatattagtggatacatttaatgtatcac-aatttttcatgagggtatatttggtcaaataataaaaagataacaacaa-taataacatcatttg 15028885  T
Q  207 ttttgatgttttt 219  Q
    |||||||||||||    
T  15028886 ttttgatgttttt 15028898  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 81 - 184
Target Start/End: Original strand, 38363574 - 38363677
Alignment:
Q  81 tttttaccctcactttaaattttctc-tttttaatattagtggatgcatttaatctatcactaactttttgtgagggcatatttaccaaaacaataaaaa 179  Q
    ||||||||||||| |||||||||||| ||||||||||||||||| ||||| ||||| |||| |||||||| ||| | |||||||  ||||||||||  ||    
T  38363574 tttttaccctcaccttaaattttctcttttttaatattagtggaagcattaaatctgtcac-aactttttatgaagacatatttgtcaaaacaatatgaa 38363672  T
Q  180 gataa 184  Q
    |||||    
T  38363673 gataa 38363677  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 218
Target Start/End: Complemental strand, 6087883 - 6087851
Alignment:
Q  186 aacaattaataacttcattggttttgatgtttt 218  Q
    |||||| ||||||||||||||||||||||||||    
T  6087883 aacaataaataacttcattggttttgatgtttt 6087851  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 28581450 - 28581490
Alignment:
Q  23 agggttaatagtattttttccctgtataataggtcatttcc 63  Q
    ||||||||||||  |||||||||||| ||||||||||||||    
T  28581450 agggttaatagtgctttttccctgtaaaataggtcatttcc 28581490  T

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