View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13975_high_25 (Length: 470)

Name: NF13975_high_25
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13975_high_25
NF13975_high_25
[»] scaffold0083 (2 HSPs)
scaffold0083 (149-451)||(50493-50795)
scaffold0083 (8-118)||(50805-50915)
[»] chr3 (26 HSPs)
chr3 (168-376)||(10076299-10076505)
chr3 (8-117)||(10214793-10214903)
chr3 (8-117)||(10223534-10223644)
chr3 (8-116)||(10103857-10103966)
chr3 (75-239)||(11768325-11768494)
chr3 (8-106)||(10123657-10123755)
chr3 (8-106)||(10180311-10180409)
chr3 (300-383)||(10376658-10376741)
chr3 (300-382)||(10364611-10364693)
chr3 (8-106)||(10256426-10256524)
chr3 (160-239)||(10031125-10031204)
chr3 (154-239)||(9838029-9838114)
chr3 (154-239)||(9848907-9848992)
chr3 (54-106)||(10028802-10028854)
chr3 (154-239)||(9837824-9837907)
chr3 (154-239)||(9848702-9848785)
chr3 (154-239)||(10126060-10126145)
chr3 (160-239)||(10657930-10658006)
chr3 (154-239)||(10662639-10662721)
chr3 (178-239)||(10104042-10104100)
chr3 (200-239)||(10214934-10214972)
chr3 (200-239)||(10223675-10223713)
chr3 (160-239)||(10516630-10516706)
chr3 (204-239)||(10123754-10123790)
chr3 (204-239)||(10256523-10256559)
chr3 (173-229)||(10259874-10259930)
[»] chr5 (3 HSPs)
chr5 (8-117)||(26793376-26793486)
chr5 (8-94)||(26818892-26818979)
chr5 (200-239)||(26793517-26793555)


Alignment Details
Target: scaffold0083 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 149 - 451
Target Start/End: Complemental strand, 50795 - 50493
Alignment:
Q  149 gtgactgcaatttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagctttaaatacagt 248  Q
    ||||||||||||||||||||||| ||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50795 gtgactgcaatttttcctttttctttgtatcaattattttgtgggatgtgggtccaatattaaccactgctgagctttgctttccagctttaaatacagt 50696  T
Q  249 actgttaaccattaattcacatacagctaagtcttcatgagtttacctttactatatacacttccaaccattcaaaaacagcactgtcagtgttatccat 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  50695 actgttaaccattaattcacatacagctaagtcttcatgagtttacctttactatatgcacttccaaccattcaaaaacagcactgtcagtgttatccat 50596  T
Q  349 tcattcacaaccgactcttctttgagtcattgctcgtaatttccatcaaaatttcatactagttggtttgttttaacaatatccctagaagatggctgca 448  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50595 tcattcacaaccgagtcttctttgagtcattgctcgtaatttccatcaaaatttcatactagttggtttgttttaacaatatccctagaagatggctgca 50496  T
Q  449 gct 451  Q
    |||    
T  50495 gct 50493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 50915 - 50805
Alignment:
Q  8 cacagatgataagaaaaatgacaacatgatacatttattttagtatatgagaggactttaactagaaattgcatatttgaatcacttaccaaaagtaaaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  50915 cacagatgataagaaaaatgacaacatgatacatttattttcgtatatgagaggagtttaactagaaattgcatatttgaatcactttccaaaagtaaaa 50816  T
Q  108 atatatataat 118  Q
    || ||||||||    
T  50815 atgtatataat 50805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 6e-41; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 168 - 376
Target Start/End: Original strand, 10076299 - 10076505
Alignment:
Q  168 tttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt-aaatacagtactgttaaccattaattc 266  Q
    |||| ||||||||||||||||||  ||||| |||||||||||||||||| ||||||||| |||||||||||| ||||   ||    ||   |||||||||    
T  10076299 tttccttgtatcaattattttgtgggatgtgggtccaatattaaccactactgagctttactttccagctttcaaattttgt----ttcttcattaattc 10076394  T
Q  267 acatacagctaagtcttcatgagtttacc-tttactatatacacttccaaccattcaaaaacagcactgtcagtgttatccattcattcacaaccgactc 365  Q
    |||||||  ||||||||| ||||| |||| ||||| |||| |||||||||||| ||||||||||| |||| |||||||||||||||||||||| ||| ||    
T  10076395 acatacatataagtcttcttgagtctaccctttacaatatgcacttccaaccactcaaaaacagcgctgttagtgttatccattcattcacaagcgagtc 10076494  T
Q  366 ttctttgagtc 376  Q
    |||||||||||    
T  10076495 ttctttgagtc 10076505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 10214793 - 10214903
Alignment:
Q  8 cacagatgataagaaaaatgacaacatgatacatttatttt-agtatatgagaggactttaactagaaattgcatatttgaatcacttaccaaaagtaaa 106  Q
    ||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| || || |||||    
T  10214793 cacaggtgataagaaaaatgacaatatgatacatttatttttagtatatgagaggactttaactagaaattgcatatttgactcactttcctaaggtaaa 10214892  T
Q  107 aatatatataa 117  Q
    ||| |||||||    
T  10214893 aatgtatataa 10214903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 10223534 - 10223644
Alignment:
Q  8 cacagatgataagaaaaatgacaacatgatacatttatttt-agtatatgagaggactttaactagaaattgcatatttgaatcacttaccaaaagtaaa 106  Q
    ||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| || || |||||    
T  10223534 cacaggtgataagaaaaatgacaatatgatacatttatttttagtatatgagaggactttaactagaaattgcatatttgactcactttcctaaggtaaa 10223633  T
Q  107 aatatatataa 117  Q
    ||| |||||||    
T  10223634 aatgtatataa 10223644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 10103857 - 10103966
Alignment:
Q  8 cacagatgataagaaaaatgacaacatgatacatttatttt-agtatatgagaggactttaactagaaattgcatatttgaatcacttaccaaaagtaaa 106  Q
    ||||| |||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||| || ||||||||    
T  10103857 cacaggtgataagaaaaatgacaatatgatacatttatttttagtatatgagaggaatttaactagaaattgcatatttgactcactttcctaaagtaaa 10103956  T
Q  107 aatatatata 116  Q
    ||| ||||||    
T  10103957 aatgtatata 10103966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 75 - 239
Target Start/End: Original strand, 11768325 - 11768494
Alignment:
Q  75 attgcatatttgaatcacttaccaaaagtaaaaatatatataat-tatatgctatttaa-gattccgatggttttagtgac---tgcaatttttcctttt 169  Q
    |||||||||||||||||||| |||||||||||||| |||||||  ||| |||||||||| |||| |||||  |||| | |    ||||| ||||||||||    
T  11768325 attgcatatttgaatcactttccaaaagtaaaaatgtatataaagtatctgctatttaaagatttcgatgcctttaattaagtgtgcaacttttcctttt 11768424  T
Q  170 tcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 239  Q
    || ||||||||||||||||||  ||||| |||||||||||||||| || ||| ||||||||||| |||||    
T  11768425 tctttgtatcaattattttgtgggatgtaggtccaatattaaccaatggtgaactttgctttcccgcttt 11768494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 10123657 - 10123755
Alignment:
Q  8 cacagatgataagaaaaatgacaacatgatacatttatttt-agtatatgagaggactttaactagaaattgcatatttgaatcacttaccaaaagtaaa 106  Q
    ||||| |||||||||||||||||  ||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||    
T  10123657 cacaggtgataagaaaaatgacat-atgctacatttatttttagtatatgagaggactttaacgagaaattgcatatttgaatcactttcctaaagtaaa 10123755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 10180311 - 10180409
Alignment:
Q  8 cacagatgataagaaaaatgacaacatgatacatttatttt-agtatatgagaggactttaactagaaattgcatatttgaatcacttaccaaaagtaaa 106  Q
    ||||| |||||||||||||||||  ||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||    
T  10180311 cacaggtgataagaaaaatgacat-atgctacatttatttttagtatatgagaggactttaacgagaaattgcatatttgaatcactttcctaaagtaaa 10180409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 300 - 383
Target Start/End: Complemental strand, 10376741 - 10376658
Alignment:
Q  300 ctatatacacttccaaccattcaaaaacagcactgtcagtgttatccattcattcacaaccgactcttctttgagtcattgctc 383  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||| ||||||||||||| ||||||    
T  10376741 ctatatgcacttccaaccattcaaaaacagcactgttagtgttatccattcactcacaagcgagtcttctttgagtctttgctc 10376658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 300 - 382
Target Start/End: Complemental strand, 10364693 - 10364611
Alignment:
Q  300 ctatatacacttccaaccattcaaaaacagcactgtcagtgttatccattcattcacaaccgactcttctttgagtcattgct 382  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| | | ||||||||||||| |||||    
T  10364693 ctatatgcacttccaaccattcaaaaacagcactgttagtgttatccattcattcacaagcaagtcttctttgagtctttgct 10364611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 10256426 - 10256524
Alignment:
Q  8 cacagatgataagaaaaatgacaacatgatacatttatttt-agtatatgagaggactttaactagaaattgcatatttgaatcacttaccaaaagtaaa 106  Q
    ||||| |||||||||||||||||  ||| ||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||    
T  10256426 cacaggtgataagaaaaatgacat-atgctacgtttatttttagtatatgagaggactttaacgagaaattgcatatttgaatcactttcctaaagtaaa 10256524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 160 - 239
Target Start/End: Original strand, 10031125 - 10031204
Alignment:
Q  160 ttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 239  Q
    |||| ||||||| |||||||||||||||||   ||||| ||||||||||||| || || |||||||||||||||||||||    
T  10031125 tttttctttttctttgtatcaattattttgagggatgtgggtccaatattaaacaatgatgagctttgctttccagcttt 10031204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 154 - 239
Target Start/End: Original strand, 9838029 - 9838114
Alignment:
Q  154 tgcaatttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 239  Q
    ||||| |||| ||||||| |||||||||||||||||   ||||| ||||||||||||| || || | |||||||||||||||||||    
T  9838029 tgcaactttttctttttctttgtatcaattattttgagggatgtgggtccaatattaaacaatgttaagctttgctttccagcttt 9838114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 154 - 239
Target Start/End: Original strand, 9848907 - 9848992
Alignment:
Q  154 tgcaatttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 239  Q
    ||||| |||| ||||||| |||||||||||||||||   ||||| ||||||||||||| || || | |||||||||||||||||||    
T  9848907 tgcaactttttctttttctttgtatcaattattttgagggatgtgggtccaatattaaacaatgttaagctttgctttccagcttt 9848992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 10028802 - 10028854
Alignment:
Q  54 atgagaggactttaactagaaattgcatatttgaatcacttaccaaaagtaaa 106  Q
    |||||||||||||||| |||||||||||||||||||||||| || ||||||||    
T  10028802 atgagaggactttaacgagaaattgcatatttgaatcactttcctaaagtaaa 10028854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 154 - 239
Target Start/End: Original strand, 9837824 - 9837907
Alignment:
Q  154 tgcaatttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 239  Q
    ||||| |||||||||||| ||| ||||||||||||||  ||||| ||||||||||||| || ||   |||||||||||||||||||    
T  9837824 tgcaacttttcctttttctttgcatcaattattttgtgggatgtgggtccaatattaaacaatg--aagctttgctttccagcttt 9837907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 154 - 239
Target Start/End: Original strand, 9848702 - 9848785
Alignment:
Q  154 tgcaatttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 239  Q
    ||||| |||||||||||| ||| ||||||||||||||  ||||| ||||||||||||| || ||   |||||||||||||||||||    
T  9848702 tgcaacttttcctttttctttgcatcaattattttgtgggatgtgggtccaatattaaacaatg--aagctttgctttccagcttt 9848785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 154 - 239
Target Start/End: Original strand, 10126060 - 10126145
Alignment:
Q  154 tgcaatttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 239  Q
    ||||| |||| ||||| | |||||||||||||||||   ||||| ||||||||||||| || || ||| |||||||||||||||||    
T  10126060 tgcaactttttcttttgctttgtatcaattattttgagggatgtgggtccaatattaaacaatgatgacctttgctttccagcttt 10126145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 160 - 239
Target Start/End: Original strand, 10657930 - 10658006
Alignment:
Q  160 ttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 239  Q
    |||||||||||| ||||||||||||||||| | ||||| |||||   ||||| ||||| ||| |||||||||||||||||    
T  10657930 ttttcctttttctttgtatcaattattttgaaggatgtgggtcc---attaatcactgatgacctttgctttccagcttt 10658006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 154 - 239
Target Start/End: Original strand, 10662639 - 10662721
Alignment:
Q  154 tgcaatttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 239  Q
    ||||| |||||||||||| |||||| |||||||||| | ||||| |||||   ||||| ||||| ||| |||||||||||||||||    
T  10662639 tgcaacttttcctttttctttgtattaattattttgaaggatgtgggtcc---attaatcactgatgaactttgctttccagcttt 10662721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 10104042 - 10104100
Alignment:
Q  178 tcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 239  Q
    |||||||||||||  |||||  ||||||||||||| ||||||||||||||||||||||||||    
T  10104042 tcaattattttgtgggatgt--gtccaatattaac-actgctgagctttgctttccagcttt 10104100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 239
Target Start/End: Original strand, 10214934 - 10214972
Alignment:
Q  200 gtccaatattaaccactgctgagctttgctttccagcttt 239  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  10214934 gtccaatattaac-actgctgagctttgctttccagcttt 10214972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 239
Target Start/End: Original strand, 10223675 - 10223713
Alignment:
Q  200 gtccaatattaaccactgctgagctttgctttccagcttt 239  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  10223675 gtccaatattaac-actgctgagctttgctttccagcttt 10223713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 239
Target Start/End: Original strand, 10516630 - 10516706
Alignment:
Q  160 ttttcctttttcattgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgctttccagcttt 239  Q
    |||||||||||| ||||||||||||||||| | ||||| |||||   | ||| ||||| ||| || ||||||||||||||    
T  10516630 ttttcctttttctttgtatcaattattttgaaggatgtgggtcc---agtaatcactgatgacctatgctttccagcttt 10516706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 204 - 239
Target Start/End: Original strand, 10123754 - 10123790
Alignment:
Q  204 aatattaaccactgctgagc-tttgctttccagcttt 239  Q
    |||||||||||||||||||| ||||||||||||||||    
T  10123754 aatattaaccactgctgagcttttgctttccagcttt 10123790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 204 - 239
Target Start/End: Original strand, 10256523 - 10256559
Alignment:
Q  204 aatattaaccactgctgagc-tttgctttccagcttt 239  Q
    |||||||||||||||||||| ||||||||||||||||    
T  10256523 aatattaaccactgctgagcttttgctttccagcttt 10256559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 10259874 - 10259930
Alignment:
Q  173 ttgtatcaattattttgtaagatgtcggtccaatattaaccactgctgagctttgct 229  Q
    ||||||||||||||||| | ||||| ||||||||||||| || || ||| |||||||    
T  10259874 ttgtatcaattattttgaaggatgtgggtccaatattaaacaatgatgacctttgct 10259930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 26793376 - 26793486
Alignment:
Q  8 cacagatgataagaaaaatgacaacatgatacatttatttt-agtatatgagaggactttaactagaaattgcatatttgaatcacttaccaaaagtaaa 106  Q
    ||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| || || |||||    
T  26793376 cacaggtgataagaaaaatgacaatatgatacatttatttttagtatatgagaggactttaactagaaattgcatatttgactcactttcctaaggtaaa 26793475  T
Q  107 aatatatataa 117  Q
    ||| |||||||    
T  26793476 aatgtatataa 26793486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 26818892 - 26818979
Alignment:
Q  8 cacagatgataagaaaaatgacaacatgatacatttatttt-agtatatgagaggactttaactagaaattgcatatttgaatcactt 94  Q
    ||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  26818892 cacaggtgataagaaaaatgacaatatgatacatttatttttagtatatgagaggactttaactagaaattgcatatttgactcactt 26818979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 239
Target Start/End: Original strand, 26793517 - 26793555
Alignment:
Q  200 gtccaatattaaccactgctgagctttgctttccagcttt 239  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  26793517 gtccaatattaac-actgctgagctttgctttccagcttt 26793555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University