View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_high_32 (Length: 432)
Name: NF13975_high_32
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_high_32 |
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Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 95 - 420
Target Start/End: Original strand, 36850776 - 36851101
Alignment:
| Q |
95 |
atatggagtgaattactatagggtcattggtgaggtaccccattatttgttttcgattttttcactaccctttgcttaaataactcctttttatcatgct |
194 |
Q |
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| T |
36850776 |
atatggagtgaattactatagggtcattggtgaggtaccccattattttttttcgattttttcactaccctttgcttaaataactcctttttatcatgct |
36850875 |
T |
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| Q |
195 |
tctaatgttatgtttgtttttatatatggatgcaagtactatagggtcattgtatttgttgaggtacctgttatctatttttcttcaattttcttagaac |
294 |
Q |
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| T |
36850876 |
tctaatgttatgtttgtgtttatatatggactcaagtactatagggtcattgtatttgttgaggtacctgttatctatttttcttcaattttcttagaac |
36850975 |
T |
|
| Q |
295 |
aaaaactagtaacagaagatttaagataatgtagctcgcaatcaatggaacacaatcgtttgtttacgcaatttggccaattgtgtctgcctatgcgact |
394 |
Q |
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| T |
36850976 |
aaaaactagtaacagaagattaaagataatgtagctcgcaatcaatggaacacaatcgtttgtttacgcaattcggccaattgtgtctgcctatgcgact |
36851075 |
T |
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| Q |
395 |
atagagtagctacagttccgaatatt |
420 |
Q |
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| T |
36851076 |
atagagtagctacagttccgaatatt |
36851101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 170 - 420
Target Start/End: Complemental strand, 35037861 - 35037620
Alignment:
| Q |
170 |
ttaaataactcctttttatcatgcttctaatgttatgtttgtttttatatatggatgcaagtactatagggtcattgtatttgttgaggtacctg-ttat |
268 |
Q |
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| T |
35037861 |
ttaaagaactcttttttattatgcttttaatgttatgtttgtgttt-tacatggactcaagtactatagggtcattgt------tgaggtaccccattgt |
35037769 |
T |
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| Q |
269 |
ctatttttcttcaattttcttagaacaaaaactagtaacagaagatttaagataatgtagctcgcaatcaatggaacacaatcgtttgtttacgcaattt |
368 |
Q |
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| T |
35037768 |
ttatttttctttggttttggtagaacaa---ctagtaacagaagattaaagataacataaatcgtaaacaatggaacttgatcgtttgtttacgcaattt |
35037672 |
T |
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| Q |
369 |
ggccaattgtgtctgcctatgcgactatagagtagctacagttccgaatatt |
420 |
Q |
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| T |
35037671 |
ggccaattgtgtctgcctctgtgactatagagtagctataattccgaatatt |
35037620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 379
Target Start/End: Complemental strand, 38970260 - 38970164
Alignment:
| Q |
283 |
ttttcttagaacaaaaactagtaacagaagatttaagataatgtagctcgcaatcaatggaacacaatcgtttgtttacgcaatttggccaattgtg |
379 |
Q |
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| T |
38970260 |
ttttgttagaacatcaactagtaacagaagatcaaagaaaacgcaaatcgcaaacaacggaacacaatcgtttgtttactcatttcggctaattgtg |
38970164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 413
Target Start/End: Original strand, 32349565 - 32349689
Alignment:
| Q |
288 |
ttagaacaaaaactagtaacagaagatttaagataatgtagctcgcaatcaatggaacacaatcgtttgtttacgcaatttggccaattgtgtctgccta |
387 |
Q |
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| T |
32349565 |
ttagaacagcaactagtaacaaaagattaaagataacacaaatcgcaaacaatggaacatgatcccttgtttacgc-agttggacaattgtgtctatctt |
32349663 |
T |
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| Q |
388 |
tgcgactatagagtagctacagttcc |
413 |
Q |
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| T |
32349664 |
tgcgactaaagagcagctatagttcc |
32349689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 364
Target Start/End: Complemental strand, 52579771 - 52579694
Alignment:
| Q |
288 |
ttagaacaaaaactagtaacagaagatttaagataatgtagctcgcaa-tcaatggaacacaatcgtttgtttacgca |
364 |
Q |
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|||||||| |||||||||||||||||| |||| |||| | |||||| ||||| ||||| |||||||||||||||| |
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| T |
52579771 |
ttagaacagcaactagtaacagaagattaaagaaaatgaaaatcgcaagacaatgaaacacgatcgtttgtttacgca |
52579694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 420
Target Start/End: Original strand, 21399685 - 21399768
Alignment:
| Q |
337 |
caatggaacacaatcgttt-gtttacgcaatttggccaattgtgtctgcctatgcgactatagagtagctacagttccgaatatt |
420 |
Q |
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| T |
21399685 |
caatggaacacaatcctttcgtttacgcagtttg-ccaattgtgcctacctctgagactatagagtagctataattccgtatatt |
21399768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 406
Target Start/End: Complemental strand, 27906014 - 27905957
Alignment:
| Q |
349 |
atcgtttgtttacgcaatttggccaattgtgtctgcctatgcgactatagagtagcta |
406 |
Q |
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| T |
27906014 |
atcgtttgtttaggtaattcggtcaattgtgtctacctatgtgactatagagcagcta |
27905957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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