View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_high_39 (Length: 397)
Name: NF13975_high_39
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_high_39 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 41895887 - 41896264
Alignment:
| Q |
1 |
acctatgcaaattgcaacctgaaatgaaagaaacgtaaannnnnnnnnnnnaatgacaaatataagagaaacatatattatattctgattttagattgtt |
100 |
Q |
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| T |
41895887 |
acctatgcaaattgcaacctgaaatgaaagaaacgtaaatttttattttttaatgacaaatataagagaaacatatattatattctgattttagattgtt |
41895986 |
T |
|
| Q |
101 |
acattttttaaagaaaaattgctaatgtgaattgatcattacccaattgatgaaccaattgatactgaatctccttggcttcttgattatcaaccacatt |
200 |
Q |
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| T |
41895987 |
acattttttaaagaaaaattgctaacgtgaattgatcattacccaattgatgaaccaattgatactgaatctccttggcttcttgattatcaaccacatt |
41896086 |
T |
|
| Q |
201 |
atactaggaagctgaaataattcacaagaaaataattcatcttttgattttataattaattcatttaaaaatttgacaatttgacataagcatagagaaa |
300 |
Q |
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| T |
41896087 |
atactaggaagctgaaataattcacaagaaaataattcatcttttgattttataattaattcatttaaaaatttgacaatttgacataagcatagagaaa |
41896186 |
T |
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| Q |
301 |
ttgagaggacaagagtgccttacaaaatatgatgtgggagcaaaaccaaatccaccaaagaacccaagaagatctcca |
378 |
Q |
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| T |
41896187 |
ttgagaggacaagagtgccttacaaaatatgacgtgggagcaaaaccaaatccaccaaagaacccaagaagatctcca |
41896264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 136 - 374
Target Start/End: Original strand, 41890420 - 41890648
Alignment:
| Q |
136 |
tcattacccaattgatgaaccaattgatactgaatctccttggcttcttgattatcaaccacattatactaggaagctgaaataattcacaagaaaataa |
235 |
Q |
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| T |
41890420 |
tcattacccaattgatgaaccagttgatgctgaatttctttggtttcttgattatcatccacattatgctaggaagctgaaacaattaacaagccaataa |
41890519 |
T |
|
| Q |
236 |
ttcatcttttgattttataattaattcatttaaaaatttgacaatttgacataagcatagagaaattgagaggacaagagtgccttacaaaatatgatgt |
335 |
Q |
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| T |
41890520 |
ttgactttttagtttcagaatcaattcattttaaa--ttgacaatttgacataag--------aatagagaggacaagagagccttacaaaatatgaagt |
41890609 |
T |
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| Q |
336 |
gggagcaaaaccaaatccaccaaagaacccaagaagatc |
374 |
Q |
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| T |
41890610 |
gggagcaaaaccaaatccaccaaagaatccaagaagatc |
41890648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 314 - 374
Target Start/End: Complemental strand, 22551979 - 22551919
Alignment:
| Q |
314 |
agtgccttacaaaatatgatgtgggagcaaaaccaaatccaccaaagaacccaagaagatc |
374 |
Q |
| |
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|||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
22551979 |
agtggcttacaaaatatgaagtgggagcaaaaccaaatccaccaaagaagccaagaagatc |
22551919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 22552153 - 22552070
Alignment:
| Q |
139 |
ttacccaattgatgaaccaattgatactgaatctccttggcttcttgattatcaaccacattatactaggaagctgaaataatt |
222 |
Q |
| |
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|||||||||| |||||||| ||||| || |||||| |||| ||||||||||| | |||||||||||||||||||||||| |||| |
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| T |
22552153 |
ttacccaatttatgaaccagttgatgctaaatctctttggtttcttgattattagccacattatactaggaagctgaaacaatt |
22552070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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