View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13975_high_4 (Length: 617)

Name: NF13975_high_4
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13975_high_4
NF13975_high_4
[»] chr2 (26 HSPs)
chr2 (1-586)||(7041690-7042272)
chr2 (247-586)||(7028475-7028812)
chr2 (58-427)||(7033955-7034324)
chr2 (1-92)||(7028807-7028898)
chr2 (1-54)||(37038802-37038855)
chr2 (1-48)||(19164424-19164471)
chr2 (1-54)||(10195742-10195795)
chr2 (1-54)||(18719465-18719518)
chr2 (1-54)||(33055958-33056011)
chr2 (1-54)||(7872809-7872862)
chr2 (1-54)||(18579234-18579287)
chr2 (1-54)||(4658264-4658319)
chr2 (2-54)||(11132619-11132671)
chr2 (15-55)||(19636590-19636630)
chr2 (15-55)||(19835183-19835223)
chr2 (2-54)||(43480902-43480954)
chr2 (15-54)||(4288743-4288782)
chr2 (15-54)||(29396712-29396751)
chr2 (15-54)||(32228043-32228082)
chr2 (15-54)||(38926688-38926727)
chr2 (15-54)||(42743111-42743149)
chr2 (1-43)||(29411763-29411805)
chr2 (13-54)||(12393951-12393992)
chr2 (1-54)||(33482262-33482315)
chr2 (1-45)||(36685782-36685826)
chr2 (2-54)||(40608638-40608690)
[»] chr8 (21 HSPs)
chr8 (1-54)||(40399910-40399963)
chr8 (1-55)||(13367980-13368034)
chr8 (1-54)||(39463326-39463379)
chr8 (1-54)||(45358927-45358980)
chr8 (1-54)||(6374480-6374533)
chr8 (1-54)||(42179162-42179215)
chr8 (1-55)||(43561390-43561444)
chr8 (5-54)||(9812244-9812293)
chr8 (1-54)||(34156602-34156655)
chr8 (15-55)||(9880532-9880572)
chr8 (368-412)||(13133168-13133212)
chr8 (1-41)||(15227634-15227674)
chr8 (15-55)||(44713616-44713656)
chr8 (15-54)||(4989560-4989599)
chr8 (5-55)||(15750361-15750412)
chr8 (15-54)||(43448798-43448837)
chr8 (1-54)||(5295438-5295492)
chr8 (5-47)||(14234255-14234297)
chr8 (1-54)||(19574454-19574508)
chr8 (11-52)||(43970086-43970127)
chr8 (15-55)||(7839540-7839580)
[»] chr7 (25 HSPs)
chr7 (1-54)||(7759327-7759380)
chr7 (1-54)||(1031222-1031275)
chr7 (1-52)||(31196637-31196688)
chr7 (1-54)||(28289281-28289335)
chr7 (1-54)||(29636257-29636310)
chr7 (1-54)||(30312525-30312578)
chr7 (1-54)||(40753460-40753512)
chr7 (1-45)||(8604042-8604086)
chr7 (15-54)||(1742073-1742112)
chr7 (15-54)||(37815806-37815845)
chr7 (15-54)||(48684805-48684844)
chr7 (1-54)||(10476203-10476256)
chr7 (1-54)||(21752142-21752195)
chr7 (1-54)||(21819350-21819403)
chr7 (2-54)||(8293099-8293151)
chr7 (15-54)||(13405157-13405196)
chr7 (15-54)||(22298078-22298117)
chr7 (15-54)||(29530965-29531004)
chr7 (15-54)||(31418543-31418582)
chr7 (1-55)||(33939763-33939818)
chr7 (15-54)||(35777901-35777940)
chr7 (1-54)||(40339525-40339579)
chr7 (1-54)||(24133161-24133214)
chr7 (18-54)||(27935852-27935888)
chr7 (1-41)||(42753774-42753814)
[»] chr1 (27 HSPs)
chr1 (1-54)||(46554865-46554918)
chr1 (1-54)||(27209056-27209109)
chr1 (1-54)||(29567963-29568016)
chr1 (1-41)||(49900801-49900841)
chr1 (1-42)||(5046-5087)
chr1 (1-54)||(25560903-25560956)
chr1 (15-54)||(15823116-15823155)
chr1 (15-54)||(32806968-32807007)
chr1 (1-54)||(8895046-8895099)
chr1 (1-54)||(8989670-8989723)
chr1 (15-54)||(9915525-9915564)
chr1 (1-40)||(16757239-16757278)
chr1 (1-48)||(18794579-18794626)
chr1 (15-54)||(25151891-25151930)
chr1 (15-54)||(31491800-31491839)
chr1 (19-54)||(34110613-34110648)
chr1 (2-55)||(28538272-28538326)
chr1 (15-45)||(35847972-35848002)
chr1 (15-53)||(46046055-46046093)
chr1 (1-54)||(49468741-49468795)
chr1 (1-54)||(26595100-26595153)
chr1 (1-54)||(31699320-31699373)
chr1 (1-42)||(39477751-39477792)
chr1 (1-41)||(2610874-2610914)
chr1 (1-41)||(7191251-7191291)
chr1 (16-48)||(26755302-26755334)
chr1 (15-47)||(48025291-48025323)
[»] chr4 (34 HSPs)
chr4 (4-55)||(6991298-6991349)
chr4 (1-54)||(30261326-30261379)
chr4 (1-54)||(8971109-8971163)
chr4 (15-55)||(1819644-1819684)
chr4 (11-54)||(19451241-19451284)
chr4 (1-55)||(44571900-44571955)
chr4 (15-54)||(53814533-53814572)
chr4 (1-55)||(44650955-44651009)
chr4 (1-54)||(47817805-47817859)
chr4 (1-54)||(50203141-50203194)
chr4 (1-54)||(52162171-52162224)
chr4 (1-53)||(10573192-10573244)
chr4 (15-54)||(19878730-19878769)
chr4 (15-54)||(28734680-28734719)
chr4 (15-54)||(37654491-37654530)
chr4 (15-54)||(38991797-38991836)
chr4 (15-54)||(42605654-42605693)
chr4 (1-48)||(44868294-44868341)
chr4 (15-54)||(49089545-49089584)
chr4 (15-54)||(52848090-52848129)
chr4 (15-54)||(52957826-52957865)
chr4 (15-54)||(56373611-56373650)
chr4 (1-47)||(9809667-9809713)
chr4 (15-53)||(20448121-20448159)
chr4 (1-47)||(25123770-25123816)
chr4 (1-54)||(30780056-30780110)
chr4 (1-54)||(45839704-45839758)
chr4 (1-54)||(11364293-11364346)
chr4 (1-54)||(41496272-41496325)
chr4 (17-54)||(41920345-41920382)
chr4 (1-54)||(46392099-46392151)
chr4 (18-54)||(2728434-2728470)
chr4 (15-47)||(18430071-18430103)
chr4 (5-45)||(56460156-56460196)
[»] chr5 (27 HSPs)
chr5 (1-55)||(14161932-14161986)
chr5 (11-54)||(7736451-7736494)
chr5 (2-48)||(11977656-11977702)
chr5 (1-54)||(36164954-36165007)
chr5 (2-55)||(38362169-38362222)
chr5 (1-54)||(38369939-38369992)
chr5 (2-54)||(7748930-7748982)
chr5 (15-54)||(42661972-42662011)
chr5 (1-54)||(4425041-4425095)
chr5 (1-47)||(7721162-7721208)
chr5 (1-55)||(15167043-15167097)
chr5 (10-54)||(4911147-4911192)
chr5 (2-47)||(24281164-24281209)
chr5 (2-47)||(24381002-24381047)
chr5 (1-41)||(27557861-27557901)
chr5 (1-48)||(1309397-1309444)
chr5 (15-54)||(2729818-2729857)
chr5 (15-54)||(3306041-3306080)
chr5 (15-54)||(34446059-34446098)
chr5 (1-54)||(39566250-39566304)
chr5 (1-54)||(21634179-21634231)
chr5 (1-54)||(21642426-21642478)
chr5 (1-54)||(34534426-34534479)
chr5 (15-54)||(6519058-6519098)
chr5 (2-54)||(28591659-28591711)
chr5 (4-48)||(34382118-34382162)
chr5 (244-280)||(36980608-36980644)
[»] chr6 (19 HSPs)
chr6 (15-54)||(29713438-29713477)
chr6 (1-54)||(16128039-16128092)
chr6 (1-54)||(17828350-17828403)
chr6 (1-48)||(32193769-32193816)
chr6 (1-54)||(10540508-10540562)
chr6 (1-54)||(1502785-1502838)
chr6 (1-54)||(9940715-9940768)
chr6 (1-54)||(12322919-12322972)
chr6 (1-54)||(12459351-12459404)
chr6 (15-54)||(234116-234155)
chr6 (1-54)||(13011380-13011430)
chr6 (10-41)||(13503890-13503921)
chr6 (1-54)||(577128-577182)
chr6 (2-55)||(18737119-18737175)
chr6 (1-54)||(3988776-3988829)
chr6 (2-54)||(17267639-17267692)
chr6 (2-54)||(17552279-17552332)
chr6 (21-54)||(31443477-31443510)
chr6 (14-54)||(19600501-19600541)
[»] chr3 (22 HSPs)
chr3 (1-55)||(22857157-22857211)
chr3 (1-54)||(30315376-30315430)
chr3 (1-54)||(9189465-9189518)
chr3 (1-54)||(36844772-36844825)
chr3 (1-53)||(45213752-45213805)
chr3 (1-54)||(48901787-48901840)
chr3 (1-54)||(48903353-48903406)
chr3 (1-54)||(19373653-19373706)
chr3 (1-54)||(30934839-30934892)
chr3 (15-48)||(31853597-31853630)
chr3 (1-54)||(38141017-38141070)
chr3 (1-46)||(40487895-40487940)
chr3 (15-55)||(35557786-35557826)
chr3 (15-54)||(13756902-13756941)
chr3 (15-54)||(32492210-32492249)
chr3 (15-54)||(38016456-38016495)
chr3 (15-54)||(38363873-38363912)
chr3 (15-54)||(50088345-50088384)
chr3 (1-54)||(30431187-30431241)
chr3 (15-48)||(11393627-11393660)
chr3 (15-55)||(45518512-45518552)
chr3 (15-55)||(51398092-51398132)
[»] scaffold0502 (1 HSPs)
scaffold0502 (1-54)||(604-657)
[»] scaffold0182 (1 HSPs)
scaffold0182 (1-54)||(18287-18340)
[»] scaffold0026 (1 HSPs)
scaffold0026 (1-54)||(4208-4261)
[»] scaffold0136 (1 HSPs)
scaffold0136 (1-54)||(9611-9665)
[»] scaffold0300 (1 HSPs)
scaffold0300 (1-54)||(4632-4685)


Alignment Details
Target: chr2 (Bit Score: 459; Significance: 0; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 1 - 586
Target Start/End: Complemental strand, 7042272 - 7041690
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaatggttttgatcaacgagaaacttaacattacattgtttcggctaag 100  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7042272 caattaatactatatacactactttcaaagtattcttttttctttaataaaaaatggttttgatcaacgagaaacttaacattacattgtttcggctaag 7042173  T
Q  101 tgagtgggggaaaagatgggtgagtgagttggactgagtcactgtttgggttgagttgatcgagagtttctctaagcatgtgaaaaattgggacgaacac 200  Q
    ||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7042172 tgagtaggg-aaaagatgggtgagtgggttggactgagtcactgtttgggttgagttgatcgagagtttctctaagcatgtgaaaaattgggacgaacac 7042074  T
Q  201 atagaaactaaacacatatttttgtagttttcgatttaggttgatttggtttgcagttttctatttggttgattcaatttcgaaaatccctatatcaaaa 300  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |   |||||||||||    
T  7042073 atagaaaccaaacacatatttttgtagttttcgatttaggttgatttagtttgcagttttctatttggttgattcaattttgaacactgctatatcaaaa 7041974  T
Q  301 taagtcttgttaaaacgcgaaaaaagaatatttaaatgatacgcataatcaattttacaccgagaatcaatgaaaatcccctatcttgccacatcacctc 400  Q
    ||||| |||||||||| | |||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||    
T  7041973 taagttttgttaaaacacaaaaaaagaatatttaaatgatacgcataattaatttcacaccgagaattaatgaaaatcccctatcctgccacatcacctc 7041874  T
Q  401 acttttgtaaggctaattagaaatgaatagtgtaacatagaaacatggtgatatctcaatataaaaatattttacattgaaaatgcgtacctattaaact 500  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||    
T  7041873 acttttgtaaggctaattagaaatgaatagtgtaacatacaaacatggtgatatctcaatataaaaatatttcaaattgaaaatgtgtacctattaaact 7041774  T
Q  501 ctaaaaatccatcaatgactcgcatatacaatttttctcttattttgtctaaattaaagttttaatcctccatttctaaaattaag 586  Q
    ||||||| ||||||||||  | |||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  7041773 ctaaaaacccatcaatga--cccatacacaatttttctcttattttatctaaattaaagttttaatcctccatttcgaaaattaag 7041690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 247 - 586
Target Start/End: Complemental strand, 7028812 - 7028475
Alignment:
Q  247 tggtttgcagttttctatttggttgattcaatttcgaaaatccctatatcaaaataagtcttgttaaaacgcgaaaaaagaatatttaaatgatacgcat 346  Q
    |||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||  | |||| |||||||||||||||||||||||    
T  7028812 tggtttgcagttgtctatttggttgattcaatttagaaaacccctatatcaaaataagttttgttaaatagagaaagaagaatatttaaatgatacgcat 7028713  T
Q  347 aatcaattttacaccgagaatcaatgaaaatcccctatcttgccacatcacctcacttttgtaaggctaattagaaatgaatagtgtaacatagaaacat 446  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  7028712 aatcaattttacaccgagaatcaatgaaaatcccctatcttgccacatcacctcatttttgtaaggctaattagaaatgaatagtataacatagaaacat 7028613  T
Q  447 ggtgatatctcaatataaaaatattttacattgaaaatgcgtacctattaaactctaaaaatccatcaatgactcgcatatacaatttttctcttatttt 546  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||| |||||||||||||||||||    
T  7028612 ggtgatatctcaatataaaaatattttacattgaaaatgcgtacctattaaactctaaaaacccatcaatgact--catacacaatttttctcttatttt 7028515  T
Q  547 gtctaaattaaagttttaatcctccatttctaaaattaag 586  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  7028514 gtctaaattaaagctttaaccctccatttctaaaattaag 7028475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 58 - 427
Target Start/End: Complemental strand, 7034324 - 7033955
Alignment:
Q  58 ttttgatcaacgagaaacttaacattacattgtt-tcggctaagtgagtgggggaaaagatgggtgagtgagttggactgagtcactgtttgggttgagt 156  Q
    ||||||| |||| |||||||||||| |||| ||  |||||| |||||||||||||||| | |||||||| ||||||||| |||||||| || ||||||||    
T  7034324 ttttgattaacgggaaacttaacatcacatagtggtcggctgagtgagtgggggaaaaaaggggtgagtaagttggactaagtcactgcttaggttgagt 7034225  T
Q  157 tgatcgagagtttctctaagcatgtgaaaaattgggacgaacacatagaaactaaacacatatttttgtagttttcgatttaggttgatttggtttgcag 256  Q
    |||| ||||||||||||||| |||||||||||||||  ||||||||| |||| |||||||   |||||||||||||||||||||| ||||||||||||||    
T  7034224 tgattgagagtttctctaagtatgtgaaaaattggggtgaacacatacaaaccaaacacaaccttttgtagttttcgatttaggtagatttggtttgcag 7034125  T
Q  257 ttttctatttggttgattcaatttcgaaaatccctatatcaaaataagtcttgttaaaacgcgaaaaaagaatatttaaatgatacgcataatcaatttt 356  Q
    ||||||||||||||| |||||||| ||| | |||||| ||||||||||| |||||||||||||| ||||||| |||||||||||| |||||||||| |||    
T  7034124 ttttctatttggttggttcaattttgaacacccctatttcaaaataagttttgttaaaacgcga-aaaagaagatttaaatgatatgcataatcaaattt 7034026  T
Q  357 acaccgagaatcaatgaaaatcccctatcttgccacatcacctcacttttgtaaggctaattagaaatgaa 427  Q
    ||   |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  7034025 acgtagagaatcaatgaaaatccactgtcttgccacatcacctcacttttgtaaggctaattagaaatgaa 7033955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 7028898 - 7028807
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaatggttttgatcaacgagaaacttaacattacattgttt 92  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7028898 caattaatactatatacactactttcaaagtattattttttctttaataaaaaatggttttgatcaacgagaaacttaacattacatggttt 7028807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 37038855 - 37038802
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  37038855 caattaatattatatacactactttcaaagtattattttttctttaatgaaaaa 37038802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 19164424 - 19164471
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaat 48  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  19164424 caattaatattatatacactactttcaaagtattattttttctttaat 19164471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 10195742 - 10195795
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||||||| ||||||||||||||| |||| ||||||||||||||||||||||||    
T  10195742 caattaatgatatatacactacttccaaaatattattttttctttaataaaaaa 10195795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 18719518 - 18719465
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||| |||||    
T  18719518 caattaatactatatacactattttcaaagtattattttttctttaatgaaaaa 18719465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 33055958 - 33056011
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||| |||||    
T  33055958 caattaatactatatacactactttcaatgtattattttttctttaatgaaaaa 33056011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 7872862 - 7872809
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| |||| | ||||||||||||||||||||||||||||||| |||||    
T  7872862 caattaatactataaatactactttcaaagtattattttttctttaatgaaaaa 7872809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 18579234 - 18579287
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| |||||||||||||| |||||||| |||||||||||||| |||||    
T  18579234 caattaatactatatacactacttccaaagtataattttttctttaatgaaaaa 18579287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 4658319 - 4658264
Alignment:
Q  1 caattaataatatatacactactttcaaagtatta--ttttttctttaataaaaaa 54  Q
    ||||||||| |||||||||||||||||||||||||  ||||||||||||| |||||    
T  4658319 caattaatactatatacactactttcaaagtattaatttttttctttaatgaaaaa 4658264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 11132619 - 11132671
Alignment:
Q  2 aattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||||||| |||||||| |||||||||| |||||||||||||||||| |||||    
T  11132619 aattaatactatatacattactttcaaaatattattttttctttaatgaaaaa 11132671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 19636590 - 19636630
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaat 55  Q
    ||||||| |||||||||||||||||||||||||| ||||||    
T  19636590 tacactattttcaaagtattattttttctttaatgaaaaat 19636630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 19835183 - 19835223
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaat 55  Q
    ||||||| |||||||||||||||||||||||||| ||||||    
T  19835183 tacactattttcaaagtattattttttctttaatgaaaaat 19835223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 43480954 - 43480902
Alignment:
Q  2 aattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||||||| | ||||||| |||| ||||||||||||||||||||||| |||||    
T  43480954 aattaatactttatacacaacttccaaagtattattttttctttaatgaaaaa 43480902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 4288782 - 4288743
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  4288782 tacactacttccaaagtattattttttctttaatgaaaaa 4288743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 29396751 - 29396712
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  29396751 tacactacttccaaagtattattttttctttaatgaaaaa 29396712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 32228082 - 32228043
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||| ||||||||||||||||||||||||||||| |||||    
T  32228082 tacaatactttcaaagtattattttttctttaatgaaaaa 32228043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 38926688 - 38926727
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  38926688 tacactacttccaaagtattattttttctttaatgaaaaa 38926727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 42743111 - 42743149
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  42743111 tacactactttcaaagtatt-ttttttctttaataaaaaa 42743149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 29411763 - 29411805
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttct 43  Q
    ||||||||| |||||||| |||||||||| |||||||||||||    
T  29411763 caattaatattatatacattactttcaaaatattattttttct 29411805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 12393992 - 12393951
Alignment:
Q  13 tatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| |||||||||| ||||||||||||||| |||||    
T  12393992 tatacactattttcaaagtaatattttttctttaatgaaaaa 12393951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 33482315 - 33482262
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||||||||||||||||| || ||  ||||||||| |||||| |||||||||||    
T  33482315 caattaataatatatacattatttcgaaagtattaatttttccttaataaaaaa 33482262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 36685826 - 36685782
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttcttt 45  Q
    ||||||||| |||| |||||||||| ||| |||||||||||||||    
T  36685826 caattaatactataaacactactttgaaaatattattttttcttt 36685782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 40608690 - 40608638
Alignment:
Q  2 aattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||||||  ||||||||||||| | ||| |||||||||||||||||| |||||    
T  40608690 aattaatcttatatacactactattaaaatattattttttctttaatgaaaaa 40608638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 40399963 - 40399910
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  40399963 caattaatattatatacactactttcaaagtattattttttctttaatgaaaaa 40399910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 13368034 - 13367980
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaat 55  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||    
T  13368034 caattaatattatatacactacttccaaagtattattttttctttaatgaaaaat 13367980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 39463326 - 39463379
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||| |||||    
T  39463326 caattaatactatatacactacttccaaagtattattttttctttaatgaaaaa 39463379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 45358980 - 45358927
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||| |||||    
T  45358980 caattaatattatatacactacttccaaagtattattttttctttaatgaaaaa 45358927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 6374480 - 6374533
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| |||||||| ||||| ||||||||||||||||||||||| |||||    
T  6374480 caattaatattatatacattacttccaaagtattattttttctttaatgaaaaa 6374533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 42179162 - 42179215
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| ||||||||||| ||| |||||||||||||||||||||| |||||    
T  42179162 caattaatactatatacactattttaaaagtattattttttctttaatgaaaaa 42179215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 43561390 - 43561444
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaat 55  Q
    |||||||||  |||||  |||||||||||||||||||||||||||||| ||||||    
T  43561390 caattaataccatatattctactttcaaagtattattttttctttaatgaaaaat 43561444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 9812244 - 9812293
Alignment:
Q  5 taataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||| ||||||||||||||||||||||  |||||||||||||| |||||    
T  9812244 taatattatatacactactttcaaagtacaattttttctttaatgaaaaa 9812293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 34156602 - 34156655
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| ||| |||||||||| |||| |||||||||||||||||| |||||    
T  34156602 caattaatactatgtacactacttccaaaatattattttttctttaatgaaaaa 34156655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 9880572 - 9880532
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaat 55  Q
    |||||||||| ||||||||||||||||||||||| ||||||    
T  9880572 tacactacttccaaagtattattttttctttaatgaaaaat 9880532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 368 - 412
Target Start/End: Original strand, 13133168 - 13133212
Alignment:
Q  368 caatgaaaatcccctatcttgccacatcacctcacttttgtaagg 412  Q
    |||||||||||| |||| ||||||||||||| |||||||||||||    
T  13133168 caatgaaaatccactattttgccacatcaccccacttttgtaagg 13133212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 15227634 - 15227674
Alignment:
Q  1 caattaataatatatacactactttcaaagtattatttttt 41  Q
    ||||||||| ||||||||| |||||||||||||||||||||    
T  15227634 caattaatactatatacacaactttcaaagtattatttttt 15227674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 44713616 - 44713656
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaat 55  Q
    ||||||||||||||| |||||||||||||||||| ||||||    
T  44713616 tacactactttcaaaatattattttttctttaatgaaaaat 44713656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 4989560 - 4989599
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  4989560 tacactacttacaaagtattattttttctttaatgaaaaa 4989599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 15750412 - 15750361
Alignment:
Q  5 taataatatatacactactttcaaagtattatt-ttttctttaataaaaaat 55  Q
    ||||| |||||||||||||| |||||||||||| ||||||||||| ||||||    
T  15750412 taatactatatacactacttccaaagtattatttttttctttaatgaaaaat 15750361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 43448798 - 43448837
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||| ||||||||||||||||||||||||||||| |||||    
T  43448798 tacattactttcaaagtattattttttctttaatgaaaaa 43448837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 5295492 - 5295438
Alignment:
Q  1 caattaataatatatacactactttcaaagtattatt-ttttctttaataaaaaa 54  Q
    ||||||||| |||||||||||||| |||| ||||||| ||||| |||||||||||    
T  5295492 caattaatattatatacactacttccaaaatattatttttttcattaataaaaaa 5295438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 14234297 - 14234255
Alignment:
Q  5 taataatatatacactactttcaaagtattattttttctttaa 47  Q
    ||||| |||||||||||||| |||| |||||||||||||||||    
T  14234297 taatactatatacactacttccaaaatattattttttctttaa 14234255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 19574454 - 19574508
Alignment:
Q  1 caattaataatatat-acactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| ||||| ||||||||| |||| |||||||||||||||||| |||||    
T  19574454 caattaatactatattacactacttccaaaatattattttttctttaatgaaaaa 19574508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 43970127 - 43970086
Alignment:
Q  11 tatatacactactttcaaagtattattttttctttaataaaa 52  Q
    |||||||| |||||  ||||||||||||||||||||||||||    
T  43970127 tatatacattacttctaaagtattattttttctttaataaaa 43970086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 7839540 - 7839580
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaat 55  Q
    |||||||||| |||| |||||||||||||||||| ||||||    
T  7839540 tacactacttccaaaatattattttttctttaatgaaaaat 7839580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 7759327 - 7759380
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  7759327 caattaatattatatacactactttcaaagtattattttttctttaatagaaaa 7759380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 1031222 - 1031275
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| |||||||||||||| |||| ||||||||||||||||||||||||    
T  1031222 caattaatactatatacactacttccaaattattattttttctttaataaaaaa 1031275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 31196637 - 31196688
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaa 52  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||| ||||    
T  31196637 caattaatattatatacactaatttcaaagtattattttttctttaaaaaaa 31196688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 28289281 - 28289335
Alignment:
Q  1 caattaataatatatacactactttcaaagtatta-ttttttctttaataaaaaa 54  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||    
T  28289281 caattaatactatatacactactttcaaagtattatttttttctttaatgaaaaa 28289335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 29636310 - 29636257
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| ||||||||||||||  |||||||||||||||||||||| |||||    
T  29636310 caattaatactatatacactacttctaaagtattattttttctttaatgaaaaa 29636257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 30312525 - 30312578
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| | |||||||||||| ||||||||||||||||||||| |||||||    
T  30312525 caattaatattgtatacactacttccaaagtattattttttctttagtaaaaaa 30312578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 40753512 - 40753460
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||| |||||    
T  40753512 caattaatactatatacactactttcaaagtattat-ttttctttaatgaaaaa 40753460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 8604042 - 8604086
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttcttt 45  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||    
T  8604042 caattaatactatatacactacttccaaagtattattttttcttt 8604086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 1742073 - 1742112
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  1742073 tacactactttcaaagtattattttttctttaatgaaaaa 1742112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 37815806 - 37815845
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  37815806 tacactactttcaaagtattattttttctttaatgaaaaa 37815845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 48684805 - 48684844
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  48684805 tacaccactttcaaagtattattttttctttaataaaaaa 48684844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 10476203 - 10476256
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| |||||||||||||| ||||||||||||| || |||| |||||||    
T  10476203 caattaatactatatacactacttccaaagtattatttattttttagtaaaaaa 10476256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 21752195 - 21752142
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||| | ||||||||||| ||||||||||||||||| |||||||| |||||    
T  21752195 caattaacattatatacactattttcaaagtattattttatctttaatgaaaaa 21752142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 21819350 - 21819403
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| |||||||| ||||| |||| |||||||||||||||||| |||||    
T  21819350 caattaatactatatacattacttccaaaatattattttttctttaatgaaaaa 21819403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 8293151 - 8293099
Alignment:
Q  2 aattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||||||| |||||||||||||| |||| ||||||||||||| |||| |||||    
T  8293151 aattaatattatatacactacttccaaattattattttttctgtaatgaaaaa 8293099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 13405196 - 13405157
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||||||||||||||||||| ||||||||||||| |||||    
T  13405196 tacactactttcaaagtattgttttttctttaatgaaaaa 13405157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 22298078 - 22298117
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  22298078 tacactacttccaaagtattattttttctttaatgaaaaa 22298117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 29531004 - 29530965
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||| |||||||||||||||||||||||| |||||||||    
T  29531004 tacaccactttcaaagtattattttttcttcaataaaaaa 29530965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 31418582 - 31418543
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  31418582 tacactacttccaaagtattattttttctttaattaaaaa 31418543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 33939818 - 33939763
Alignment:
Q  1 caattaataatatatacactactttcaaagtatta-ttttttctttaataaaaaat 55  Q
    ||||||||| ||||||||||| || |||||||||| ||||||||||||| ||||||    
T  33939818 caattaatattatatacactaattccaaagtattacttttttctttaatgaaaaat 33939763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 35777901 - 35777940
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  35777901 tacactacttccaaagtattattttttctttaatgaaaaa 35777940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 40339525 - 40339579
Alignment:
Q  1 caattaataatat-atacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| ||| ||||||||||| ||||||||| ||||||||||||| |||||    
T  40339525 caattaatattattatacactacttccaaagtattcttttttctttaatgaaaaa 40339579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 24133214 - 24133161
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| |||||| ||||| | |||| |||||||||||||||||| |||||    
T  24133214 caattaatactatatatactacatccaaaatattattttttctttaatgaaaaa 24133161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 27935852 - 27935888
Alignment:
Q  18 actactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  27935852 actacttccaaagtattattttttctttaatgaaaaa 27935888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 42753774 - 42753814
Alignment:
Q  1 caattaataatatatacactactttcaaagtattatttttt 41  Q
    ||||||||| ||||||||||| ||| |||||||||||||||    
T  42753774 caattaatattatatacactatttttaaagtattatttttt 42753814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 46554865 - 46554918
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  46554865 caattaatactatatacactacttccaaagtattattttttctttaataaaaaa 46554918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 27209056 - 27209109
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||| |||||    
T  27209056 caattaatattatatacactacttccaaagtattattttttctttaatgaaaaa 27209109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 29567963 - 29568016
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||| |||||    
T  29567963 caattaatactatatacactacttccaaagtattattttttctttaatgaaaaa 29568016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 49900841 - 49900801
Alignment:
Q  1 caattaataatatatacactactttcaaagtattatttttt 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  49900841 caattaataatatatacactactttcaaagtattatttttt 49900801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 5046 - 5087
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttc 42  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  5046 caattaatattatatacactactttcaaagtattattttttc 5087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 25560956 - 25560903
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| |||||||||||||| |||| |||||||||||||||||| |||||    
T  25560956 caattaatactatatacactacttccaaaatattattttttctttaatgaaaaa 25560903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 15823116 - 15823155
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  15823116 tacactactttcaaagtattattttttctttaatgaaaaa 15823155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 32807007 - 32806968
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  32807007 tacactactttcaaagtattattttttctttaatgaaaaa 32806968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 8895099 - 8895046
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| ||||||||||| ||||||| ||||||||||| |||||| |||||    
T  8895099 caattaatattatatacactattttcaaaatattattttttttttaatgaaaaa 8895046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 8989723 - 8989670
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| | |||||||||| |||||| |||||||||||||||||| |||||    
T  8989723 caattaatactctatacactacattcaaaatattattttttctttaatgaaaaa 8989670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 9915525 - 9915564
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  9915525 tacactacttgcaaagtattattttttctttaatgaaaaa 9915564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 16757278 - 16757239
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttt 40  Q
    ||||||||| ||||||||| ||||||||||||||||||||    
T  16757278 caattaatactatatacacaactttcaaagtattattttt 16757239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 18794626 - 18794579
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaat 48  Q
    ||||||||| |||||||||||||| |||| |||| |||||||||||||    
T  18794626 caattaatattatatacactacttccaaaatattcttttttctttaat 18794579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 25151891 - 25151930
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  25151891 tacactacttccaaagtattattttttctttaatgaaaaa 25151930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 31491839 - 31491800
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||||||||||||| |||||||||||||| |||||    
T  31491839 tacactactttcaaagtataattttttctttaatgaaaaa 31491800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 34110613 - 34110648
Alignment:
Q  19 ctactttcaaagtattattttttctttaataaaaaa 54  Q
    |||||||||||||||||||||||||||||| |||||    
T  34110613 ctactttcaaagtattattttttctttaatgaaaaa 34110648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 28538272 - 28538326
Alignment:
Q  2 aattaataatatatacactactttcaaagtatta-ttttttctttaataaaaaat 55  Q
    |||||||| ||||||||||| |||||| |||||| ||||||||||||| ||||||    
T  28538272 aattaatactatatacactattttcaatgtattatttttttctttaatgaaaaat 28538326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 35848002 - 35847972
Alignment:
Q  15 tacactactttcaaagtattattttttcttt 45  Q
    |||||||||||||||||||||||||||||||    
T  35848002 tacactactttcaaagtattattttttcttt 35847972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 46046055 - 46046093
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaa 53  Q
    |||||||||||||||||||||||| ||||||||| ||||    
T  46046055 tacactactttcaaagtattatttattctttaatgaaaa 46046093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 49468795 - 49468741
Alignment:
Q  1 caattaataatatat-acactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| ||||| ||||||||| ||||| ||||||||||||||||| |||||    
T  49468795 caattaatactatattacactacttccaaaggattattttttctttaatgaaaaa 49468741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 26595153 - 26595100
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| ||||||||||| || ||||| |||| |||||||||||| |||||    
T  26595153 caattaatactatatacactatttccaaagaattaatttttctttaatgaaaaa 26595100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 31699373 - 31699320
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| |||| ||| ||||| |||| |||||||||||||||||| |||||    
T  31699373 caattaatactataaacattacttccaaaatattattttttctttaatgaaaaa 31699320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 39477792 - 39477751
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttc 42  Q
    ||||||||| |||||||||||||| | |||||||||||||||    
T  39477792 caattaatactatatacactacttcctaagtattattttttc 39477751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 2610914 - 2610874
Alignment:
Q  1 caattaataatatatacactactttcaaagtattatttttt 41  Q
    ||||||||| | |||||||||||| ||||||||||||||||    
T  2610914 caattaatattctatacactacttccaaagtattatttttt 2610874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 7191291 - 7191251
Alignment:
Q  1 caattaataatatatacactactttcaaagtattatttttt 41  Q
    ||||||||| ||||||||||||||| ||| |||||||||||    
T  7191291 caattaatactatatacactacttttaaaatattatttttt 7191251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 26755302 - 26755334
Alignment:
Q  16 acactactttcaaagtattattttttctttaat 48  Q
    ||||||||| |||||||||||||||||||||||    
T  26755302 acactacttccaaagtattattttttctttaat 26755334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 48025323 - 48025291
Alignment:
Q  15 tacactactttcaaagtattattttttctttaa 47  Q
    |||||||||| ||||||||||||||||||||||    
T  48025323 tacactacttccaaagtattattttttctttaa 48025291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 6991349 - 6991298
Alignment:
Q  4 ttaataatatatacactactttcaaagtattattttttctttaataaaaaat 55  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  6991349 ttaatattatatacactattttcaaagtattattttttctttaataaaaaat 6991298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 30261326 - 30261379
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||| |||||    
T  30261326 caattaatactatatacattactttcaaagtattattttttctttaatgaaaaa 30261379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 8971109 - 8971163
Alignment:
Q  1 caattaataatatatacactactttcaaagtatta-ttttttctttaataaaaaa 54  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||| |||||    
T  8971109 caattaataatatatacactacttccaaagtattatttttttctttaatgaaaaa 8971163  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 1819644 - 1819684
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaat 55  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  1819644 tacactactttcaaagtattattttttctttaatgaaaaat 1819684  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 19451284 - 19451241
Alignment:
Q  11 tatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||||||||||||| ||||||||||||||||||||||| |||||    
T  19451284 tatatacactacttccaaagtattattttttctttaatgaaaaa 19451241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 44571955 - 44571900
Alignment:
Q  1 caattaataatatat-acactactttcaaagtattattttttctttaataaaaaat 55  Q
    ||||||||||||| | ||||||||| ||||||||||||||||||||||| ||||||    
T  44571955 caattaataatatgttacactacttccaaagtattattttttctttaatgaaaaat 44571900  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 53814572 - 53814533
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  53814572 tacactactttcaaagtattattttttctttaatgaaaaa 53814533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 44650955 - 44651009
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaat 55  Q
    ||||||||| ||||||||||||||||||| |||||| || |||||||| ||||||    
T  44650955 caattaatactatatacactactttcaaaatattatattgtctttaatgaaaaat 44651009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 47817805 - 47817859
Alignment:
Q  1 caattaataatatatacactactttcaaagtatta-ttttttctttaataaaaaa 54  Q
    ||||||||| |||||||||||||| |||||||||| ||||||||||||| |||||    
T  47817805 caattaatactatatacactacttccaaagtattatttttttctttaatgaaaaa 47817859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 50203141 - 50203194
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| |||||||| |||||  |||||||||||||||||||||| |||||    
T  50203141 caattaatattatatacattacttcaaaagtattattttttctttaatgaaaaa 50203194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 52162171 - 52162224
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| || |||||||| || ||||||||||||||||||||||| |||||    
T  52162171 caattaatactaaatacactagttccaaagtattattttttctttaatgaaaaa 52162224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 10573244 - 10573192
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaa 53  Q
    ||||||||| |||||||| ||||| ||||||||||||||||| ||||| ||||    
T  10573244 caattaatactatatacaatacttccaaagtattattttttcattaatgaaaa 10573192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 19878730 - 19878769
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  19878730 tacactacttccaaagtattattttttctttaatgaaaaa 19878769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 28734680 - 28734719
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  28734680 tacactacttgcaaagtattattttttctttaatgaaaaa 28734719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 37654491 - 37654530
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  37654491 tacactacttccaaagtattattttttctttaatgaaaaa 37654530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 38991836 - 38991797
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||||||||||||||||||||||||||||| ||| |||||    
T  38991836 tacactactttcaaagtattattttttcttgaatgaaaaa 38991797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 42605654 - 42605693
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||| ||||||||||||||||||||||||||||| |||||    
T  42605654 tacattactttcaaagtattattttttctttaatgaaaaa 42605693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 44868341 - 44868294
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaat 48  Q
    |||||||||||||||||| ||||| |||| ||||||||| ||||||||    
T  44868341 caattaataatatatacattacttccaaaatattattttatctttaat 44868294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 49089545 - 49089584
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  49089545 tacactacttccaaagtattattttttctttaatgaaaaa 49089584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 52848129 - 52848090
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  52848129 tacactacttccaaagtattattttttctttaatgaaaaa 52848090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 52957865 - 52957826
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  52957865 tacactacttccaaagtattattttttctttaatgaaaaa 52957826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 56373650 - 56373611
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  56373650 tacactacttccaaagtattattttttctttaatgaaaaa 56373611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 9809713 - 9809667
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaa 47  Q
    ||||||||| |||  ||||||||||||||||||||||||| ||||||    
T  9809713 caattaatactatgcacactactttcaaagtattatttttactttaa 9809667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 20448121 - 20448159
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaa 53  Q
    |||||||||| ||||||||||||||||||||||| ||||    
T  20448121 tacactacttccaaagtattattttttctttaatgaaaa 20448159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 25123816 - 25123770
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaa 47  Q
    ||||||||| ||||||||| |||| |||| |||||||||||||||||    
T  25123816 caattaatactatatacacgacttccaaaatattattttttctttaa 25123770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 30780110 - 30780056
Alignment:
Q  1 caattaataatatatacactactttcaaagtattatt-ttttctttaataaaaaa 54  Q
    ||||||||| |||| | |||||||||||||||||||| ||||||||||| |||||    
T  30780110 caattaatattataaagactactttcaaagtattatttttttctttaatgaaaaa 30780056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 45839704 - 45839758
Alignment:
Q  1 caattaataatatatacactactttcaaagtatta-ttttttctttaataaaaaa 54  Q
    ||||||||| |||||||| ||||| |||||||||| ||||||||||||| |||||    
T  45839704 caattaatattatatacattacttccaaagtattatttttttctttaatgaaaaa 45839758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 11364293 - 11364346
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| |||||| ||||||| |||||||||||||| |||| ||| |||||    
T  11364293 caattaatattatatatactacttccaaagtattattttctcttcaatgaaaaa 11364346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 41496272 - 41496325
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| |||||||||||||  |||| |||||||| ||||| |||||||||    
T  41496272 caattaatattatatacactactcccaaaatattatttattcttcaataaaaaa 41496325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 41920382 - 41920345
Alignment:
Q  17 cactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||||||| ||||||||||||||||||||||| |||||    
T  41920382 cactacttccaaagtattattttttctttaatgaaaaa 41920345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 46392151 - 46392099
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| ||| |||||||||| |||||||||||||||| ||||||| ||||    
T  46392151 caattaata-tatttacactacttccaaagtattattttttatttaatagaaaa 46392099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 2728470 - 2728434
Alignment:
Q  18 actactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  2728470 actacttccaaagtattattttttctttaatgaaaaa 2728434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 18430071 - 18430103
Alignment:
Q  15 tacactactttcaaagtattattttttctttaa 47  Q
    |||||||||||| ||||||||||||||||||||    
T  18430071 tacactactttctaagtattattttttctttaa 18430103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 56460156 - 56460196
Alignment:
Q  5 taataatatatacactactttcaaagtattattttttcttt 45  Q
    ||||| |||||||||||||| |||| |||||||||||||||    
T  56460156 taatattatatacactacttccaaaatattattttttcttt 56460196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 14161986 - 14161932
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaat 55  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||    
T  14161986 caattaatactatatacactacttccaaagtattattttttctttaatgaaaaat 14161932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 7736451 - 7736494
Alignment:
Q  11 tatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  7736451 tatatacactactttcaaagtattattttttctttaatgaaaaa 7736494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 11977656 - 11977702
Alignment:
Q  2 aattaataatatatacactactttcaaagtattattttttctttaat 48  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||    
T  11977656 aattaatattatatacactacttccaaagtattattttttctttaat 11977702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 36164954 - 36165007
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| |||||||| ||||| |||| ||||||||||||||||||||||||    
T  36164954 caattaatactatatacattacttccaaaatattattttttctttaataaaaaa 36165007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 38362222 - 38362169
Alignment:
Q  2 aattaataatatatacactactttcaaagtattattttttctttaataaaaaat 55  Q
    |||||||| | |||| |||||||| |||||||||||||||||||||||||||||    
T  38362222 aattaatactttatatactacttttaaagtattattttttctttaataaaaaat 38362169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 38369939 - 38369992
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| |||||||||||||||||||||||||||||||  ||||| |||||    
T  38369939 caattaatattatatacactactttcaaagtattatttttttattaatgaaaaa 38369992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 7748982 - 7748930
Alignment:
Q  2 aattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||||||| ||||||||  |||||||||||||||||||||||||||| |||||    
T  7748982 aattaatactatatacataactttcaaagtattattttttctttaatgaaaaa 7748930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 42662011 - 42661972
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  42662011 tacactacttccaaagtattattttttctttaataaaaaa 42661972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 4425041 - 4425095
Alignment:
Q  1 caattaataatatat-acactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| ||||| ||||||||| ||||||||||||||||||||||| |||||    
T  4425041 caattaatactatattacactacttccaaagtattattttttctttaatgaaaaa 4425095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 7721162 - 7721208
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaa 47  Q
    |||| |||| |||||||| ||||||||||||||||||||||||||||    
T  7721162 caatcaatattatatacattactttcaaagtattattttttctttaa 7721208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 15167097 - 15167043
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaat 55  Q
    |||||| || |||||||||||||| |||| |||||||||||||||||| ||||||    
T  15167097 caattattactatatacactacttccaaaatattattttttctttaatgaaaaat 15167043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 4911192 - 4911147
Alignment:
Q  10 atatatacactactttcaaagtattatt-ttttctttaataaaaaa 54  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||    
T  4911192 atatatacactactttcaaagtattatttttttctttaatgaaaaa 4911147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 24281164 - 24281209
Alignment:
Q  2 aattaataatatatacactactttcaaagtattattttttctttaa 47  Q
    |||||||| |||| ||| ||||||||||||||||||||||||||||    
T  24281164 aattaatactatacacaatactttcaaagtattattttttctttaa 24281209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 24381047 - 24381002
Alignment:
Q  2 aattaataatatatacactactttcaaagtattattttttctttaa 47  Q
    |||||||| |||| ||| ||||||||||||||||||||||||||||    
T  24381047 aattaatactatacacaatactttcaaagtattattttttctttaa 24381002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 27557901 - 27557861
Alignment:
Q  1 caattaataatatatacactactttcaaagtattatttttt 41  Q
    ||||||||| ||||||||||||||||||| |||||||||||    
T  27557901 caattaatactatatacactactttcaaaatattatttttt 27557861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 1309444 - 1309397
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaat 48  Q
    ||||||||| |||||||||||||| |||  ||||||||||||||||||    
T  1309444 caattaatattatatacactacttacaacatattattttttctttaat 1309397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 2729857 - 2729818
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  2729857 tacactacttccaaagtattattttttctttaatgaaaaa 2729818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 3306080 - 3306041
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  3306080 tacactacttccaaagtattattttttctttaatgaaaaa 3306041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 34446098 - 34446059
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  34446098 tacactacttccaaagtattattttttctttaatgaaaaa 34446059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 39566250 - 39566304
Alignment:
Q  1 caattaataatatat-acactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||||||| | ||||||||| |||||||||||||| |||||||| |||||    
T  39566250 caattaataatatgttacactacttccaaagtattattttctctttaatgaaaaa 39566304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 21634179 - 21634231
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| |||||||||||||| |||| ||||| |||||||||||| |||||    
T  21634179 caattaatattatatacactacttccaaaatatta-tttttctttaatgaaaaa 21634231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 21642426 - 21642478
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| |||||||||||||| |||| ||||| |||||||||||| |||||    
T  21642426 caattaatattatatacactacttccaaaatatta-tttttctttaatgaaaaa 21642478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 34534426 - 34534479
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| |||  ||||||||| |||| |||||||||||||||||| |||||    
T  34534426 caattaatactatgcacactacttccaaaatattattttttctttaatgaaaaa 34534479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 6519058 - 6519098
Alignment:
Q  15 tacactactttcaaagtatta-ttttttctttaataaaaaa 54  Q
    ||||||||||||||||||||| ||||||||||||| |||||    
T  6519058 tacactactttcaaagtattatttttttctttaatgaaaaa 6519098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 28591711 - 28591659
Alignment:
Q  2 aattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||||||| ||||||||||| ||| |||  ||||||||||||||||| |||||    
T  28591711 aattaatactatatacactatttttaaaaaattattttttctttaatgaaaaa 28591659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 34382162 - 34382118
Alignment:
Q  4 ttaataatatatacactactttcaaagtattattttttctttaat 48  Q
    |||||| ||||||||||||||||||| ||| ||||||| ||||||    
T  34382162 ttaatactatatacactactttcaaaatatcattttttatttaat 34382118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 244 - 280
Target Start/End: Original strand, 36980608 - 36980644
Alignment:
Q  244 atttggtttgcagttttctatttggttgattcaattt 280  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  36980608 atttggtttgcaattttctattaggttgattcaattt 36980644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 29713477 - 29713438
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  29713477 tacactactttcaaagtattattttttctttaataaaaaa 29713438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 16128092 - 16128039
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| ||||||||||||||  |||||||||||||||||||||| |||||    
T  16128092 caattaatactatatacactacttcaaaagtattattttttctttaatgaaaaa 16128039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 17828350 - 17828403
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| |||||||||| |||||||||||||| |||||||||||| |||||    
T  17828350 caattaatactatatacacttctttcaaagtattactttttctttaatgaaaaa 17828403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 32193769 - 32193816
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaat 48  Q
    ||||||||| |||||||||||||| ||||||||||| |||||||||||    
T  32193769 caattaatactatatacactacttccaaagtattatcttttctttaat 32193816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 10540562 - 10540508
Alignment:
Q  1 caattaataatatat-acactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| ||||| ||||||||| ||||||||||||||||||||||| |||||    
T  10540562 caattaatactatattacactacttccaaagtattattttttctttaatgaaaaa 10540508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 1502838 - 1502785
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| |||||||||||||| |||| ||||||||||| |||||| |||||    
T  1502838 caattaatactatatacactacttccaaaatattattttttatttaatgaaaaa 1502785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 9940715 - 9940768
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| |||| ||||||||| |||| |||||||||||||||||| |||||    
T  9940715 caattaatattatacacactacttccaaaatattattttttctttaatgaaaaa 9940768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 12322972 - 12322919
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| |||||||||||||| ||||||||| | ||||||||||| |||||    
T  12322972 caattaatactatatacactacttccaaagtattgtgttttctttaatgaaaaa 12322919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 12459404 - 12459351
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| |||||||| ||||| ||||||||| ||||||||||||| |||||    
T  12459404 caattaatactatatacattacttccaaagtattgttttttctttaatgaaaaa 12459351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 234116 - 234155
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  234116 tacactacttccaaagtattattttttctttaatgaaaaa 234155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 13011430 - 13011380
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| ||||||||||||||||||||   ||||||||||||||| |||||    
T  13011430 caattaatactatatacactactttcaaag---tattttttctttaatgaaaaa 13011380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 41
Target Start/End: Complemental strand, 13503921 - 13503890
Alignment:
Q  10 atatatacactactttcaaagtattatttttt 41  Q
    ||||||||||||||||||||||||||||||||    
T  13503921 atatatacactactttcaaagtattatttttt 13503890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 577128 - 577182
Alignment:
Q  1 caattaataatatatacactactttcaaagtatta-ttttttctttaataaaaaa 54  Q
    ||||||||| |||||||||||||| |||| ||||| ||||||||||||| |||||    
T  577128 caattaatattatatacactacttccaaattattatttttttctttaatgaaaaa 577182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 18737175 - 18737119
Alignment:
Q  2 aattaataatatatacactactttcaaag---tattattttttctttaataaaaaat 55  Q
    |||||||| ||||||||||||||| ||||   |||||||||||||||||| ||||||    
T  18737175 aattaatattatatacactacttttaaagtactattattttttctttaatgaaaaat 18737119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 3988829 - 3988776
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| |||||| |||| ||  |||||||||||||||||||||| |||||    
T  3988829 caattaatactatatatactatttcaaaagtattattttttctttaatgaaaaa 3988776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 17267692 - 17267639
Alignment:
Q  2 aattaataatatatacactactttcaaagtattatt-ttttctttaataaaaaa 54  Q
    |||||||| ||||||||||| ||| ||||||||||| |||||||| ||||||||    
T  17267692 aattaatattatatacactatttttaaagtattatttttttctttgataaaaaa 17267639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 17552332 - 17552279
Alignment:
Q  2 aattaataatatatacactactttcaaagtattatt-ttttctttaataaaaaa 54  Q
    |||||||| |||||||||||||| |||| ||||||| ||||||||||| |||||    
T  17552332 aattaatactatatacactacttccaaaatattatttttttctttaatgaaaaa 17552279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 31443510 - 31443477
Alignment:
Q  21 actttcaaagtattattttttctttaataaaaaa 54  Q
    |||| |||||||||||||||||||||||||||||    
T  31443510 acttccaaagtattattttttctttaataaaaaa 31443477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 19600501 - 19600541
Alignment:
Q  14 atacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||| |||||| |||| ||||||||||||||||||||||||    
T  19600501 atacgctacttccaaaatattattttttctttaataaaaaa 19600541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 22857157 - 22857211
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaat 55  Q
    ||||||||| ||||||||||||||  ||| |||||||||||||||||||||||||    
T  22857157 caattaatattatatacactacttctaaaatattattttttctttaataaaaaat 22857211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 30315376 - 30315430
Alignment:
Q  1 caattaataatatatacactactttc-aaagtattattttttctttaataaaaaa 54  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||| |||||    
T  30315376 caattaatactatatacactactttcaaaagtattattttttctttaatgaaaaa 30315430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 9189518 - 9189465
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| |||||||| ||||| |||| ||||||||||||||||||||||||    
T  9189518 caattaatactatatacattacttccaaaatattattttttctttaataaaaaa 9189465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 36844825 - 36844772
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| |||||||||||||| ||||||||||| ||||||||||| |||||    
T  36844825 caattaatattatatacactacttccaaagtattatgttttctttaatgaaaaa 36844772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 45213805 - 45213752
Alignment:
Q  1 caattaataatatat-acactactttcaaagtattattttttctttaataaaaa 53  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||    
T  45213805 caattaatactatattacactactttcaaagtattattttttctttaatgaaaa 45213752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 48901787 - 48901840
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| ||||||||||| ||||| |||||||||||||||||||| |||||    
T  48901787 caattaatactatatacactaatttcatagtattattttttctttaattaaaaa 48901840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 48903353 - 48903406
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| ||||||||||| ||||| |||||||||||||||||||| |||||    
T  48903353 caattaatactatatacactaatttcatagtattattttttctttaattaaaaa 48903406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 19373653 - 19373706
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||||||||  ||||||||||||| |||||| |||||||||||||||| |||||    
T  19373653 caattaatatcatatacactacttccaaagttttattttttctttaatgaaaaa 19373706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 30934892 - 30934839
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| ||||||||||||||  ||||||||||||| |||||||| |||||    
T  30934892 caattaatactatatacactacttctaaagtattattttatctttaatgaaaaa 30934839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 31853630 - 31853597
Alignment:
Q  15 tacactactttcaaagtattattttttctttaat 48  Q
    ||||||||||||||||||||||||||||||||||    
T  31853630 tacactactttcaaagtattattttttctttaat 31853597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 38141017 - 38141070
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| |||||||||||||| |||| ||| |||||||||||||| |||||    
T  38141017 caattaatactatatacactacttccaaaatataattttttctttaatgaaaaa 38141070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 40487895 - 40487940
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttcttta 46  Q
    ||||||||| ||||||||||||||  ||||||||||||||||||||    
T  40487895 caattaatactatatacactacttctaaagtattattttttcttta 40487940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 35557826 - 35557786
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaat 55  Q
    |||||||||| ||||||||||||||||||||||| ||||||    
T  35557826 tacactacttccaaagtattattttttctttaatgaaaaat 35557786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 13756941 - 13756902
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||| |||||| ||||||||||||||||||||||||||||    
T  13756941 tacattacttttaaagtattattttttctttaataaaaaa 13756902  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 32492249 - 32492210
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||||||||| |||| ||||||||||||||||||||||||    
T  32492249 tacactacttccaaaatattattttttctttaataaaaaa 32492210  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 38016456 - 38016495
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  38016456 tacactacttccaaagtattattttttctttaatgaaaaa 38016495  T

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Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 38363873 - 38363912
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  38363873 tacactacttccaaagtattattttttctttaatgaaaaa 38363912  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 50088384 - 50088345
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||||||||||||||| |||||||||||| |||||    
T  50088384 tacactactttcaaagtattaatttttctttaatgaaaaa 50088345  T

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Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 30431187 - 30431241
Alignment:
Q  1 caattaataatatat-acactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| ||||| ||||||||| |||||||||||||||||| |||| |||||    
T  30431187 caattaatattatattacactacttccaaagtattattttttctctaatgaaaaa 30431241  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 48
Target Start/End: Original strand, 11393627 - 11393660
Alignment:
Q  15 tacactactttcaaagtattattttttctttaat 48  Q
    |||||||||| |||||||||||||||||||||||    
T  11393627 tacactacttccaaagtattattttttctttaat 11393660  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 45518552 - 45518512
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaat 55  Q
    ||||||| ||||||||||||| |||||||||||| ||||||    
T  45518552 tacactattttcaaagtattaatttttctttaatgaaaaat 45518512  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 51398092 - 51398132
Alignment:
Q  15 tacactactttcaaagtattattttttctttaataaaaaat 55  Q
    |||||||||| |||| |||||||||||||||||| ||||||    
T  51398092 tacactacttccaaaatattattttttctttaatgaaaaat 51398132  T

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Target: scaffold0502 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 657 - 604
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| |||||||||||||| |||||||||||||||  |||||| |||||    
T  657 caattaatattatatacactacttccaaagtattatttttgttttaatgaaaaa 604  T

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Target: scaffold0182 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 18340 - 18287
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||| | ||||||||||| ||||||||||||||||| |||||||| |||||    
T  18340 caattaacattatatacactattttcaaagtattattttatctttaatgaaaaa 18287  T

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Target: scaffold0026 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 4208 - 4261
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    ||||||||| ||||||||||||||  |||||||| ||||| |||||||||||||    
T  4208 caattaatattatatacactacttctaaagtattgtttttcctttaataaaaaa 4261  T

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Target: scaffold0136 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 9611 - 9665
Alignment:
Q  1 caattaataatatatacactactttcaaagtatta-ttttttctttaataaaaaa 54  Q
    ||||||||| |||||| |||||||||||| ||||| ||||||||||||| |||||    
T  9611 caattaatactatatatactactttcaaattattatttttttctttaatgaaaaa 9665  T

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Target: scaffold0300 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 4632 - 4685
Alignment:
Q  1 caattaataatatatacactactttcaaagtattattttttctttaataaaaaa 54  Q
    |||| |||| |||||||||||||| |||| |||||| ||| |||||||||||||    
T  4632 caatcaatattatatacactacttccaaaatattatatttactttaataaaaaa 4685  T

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