View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_high_42 (Length: 381)
Name: NF13975_high_42
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_high_42 |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 64 - 366
Target Start/End: Original strand, 15638395 - 15638697
Alignment:
| Q |
64 |
gacgatagaattctcgagagaactttcttgcgacaatttgtggagaatataaacaaatttaagaagctttgaactcgttacgagtctaaaggttaattgt |
163 |
Q |
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| T |
15638395 |
gacgatagaattctcgagagaactttcttgcgacaatttgtggagaatataaacaaatataagaagctttgaactcgttacgagtctaaaggttaattgt |
15638494 |
T |
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| Q |
164 |
ttctaaaataagttatagagactgaacttggaggattcctttatgtacgctccatcaaattttctttcatgaaccatatatagtgtagcttttcgtttct |
263 |
Q |
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| T |
15638495 |
ttcaaaaataagttatagagactgaacttggaggattcctttatgtatgctccattaaattttctttcatgaaccatatatagtgtagcttttcgtttct |
15638594 |
T |
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| Q |
264 |
tcaacattctggtgggagccaacccgagaagatcttcaacttggagtttggtggtggaatcaatgacgaaaagactttgtaggtcgagtagtcgcaactt |
363 |
Q |
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| T |
15638595 |
tggacattctggtgggagccaacccgagaagatcttcaacttggagtttggtggtggaatcaatgacggaaagactttgtaggtcgagtagtcgcaactt |
15638694 |
T |
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| Q |
364 |
atc |
366 |
Q |
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| T |
15638695 |
atc |
15638697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 13 - 342
Target Start/End: Original strand, 15590380 - 15590710
Alignment:
| Q |
13 |
gagaggttatatggtacatgacaattttcattacaatattttacaatacgcgac-gatagaattctcgagagaactttcttgcgacaatttgtggagaat |
111 |
Q |
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| T |
15590380 |
gagaggttatatggtacatgacaatttgcattacaatattttacaagatgccaatgatagaattctcgagagaactctcgtgcgacaatttgtggagaat |
15590479 |
T |
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| Q |
112 |
ataaacaaatttaagaagctttgaactcgttacgagtctaaaggttaattgtttctaaaataagttatagagactgaacttggaggattcctttatgtac |
211 |
Q |
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| T |
15590480 |
aaaaacaaatttaagaagcgttgaactcgtttggagtctaaaggttaattgtttcaaaactaatttatacagactgaacttggaggtttcctttatgtac |
15590579 |
T |
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| Q |
212 |
gctccatcaaattttctttcatgaaccatatatagtgtagcttttcgtttcttcaacattctggtgggagccaacccgagaagatcttcaacttggagtt |
311 |
Q |
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| T |
15590580 |
gctccatcaaattttctttcatgaaccatatatagtgcagcttttcagtttttggacattatggtgggagccaacccgagaaggtcttcaacttggaatt |
15590679 |
T |
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| Q |
312 |
tggtggtggaatcaatgacgaaaagactttg |
342 |
Q |
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| T |
15590680 |
tggtggtggaatgaatgaggagaagactttg |
15590710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 168 - 299
Target Start/End: Original strand, 15634589 - 15634724
Alignment:
| Q |
168 |
aaaataagttatagagactgaacttggaggattcctttatgtac----gctccatcaaattttctttcatgaaccatatatagtgtagcttttcgtttct |
263 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
15634589 |
aaaataagatatagagactgaacttggaggattcctttatgtacgtacgctccatcaaattttctttcatgaaccatatgtagtgtagcttttcgttttt |
15634688 |
T |
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| Q |
264 |
tcaacattctggtgggagccaacccgagaagatctt |
299 |
Q |
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| T |
15634689 |
tggacattatggtgggagccaacccgagaaggtctt |
15634724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 96
Target Start/End: Original strand, 15634558 - 15634589
Alignment:
| Q |
65 |
acgatagaattctcgagagaactttcttgcga |
96 |
Q |
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| T |
15634558 |
acgatagaattctcgagagaactttcttgcga |
15634589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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