View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_high_43 (Length: 371)
Name: NF13975_high_43
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_high_43 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 5e-84; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 4 - 185
Target Start/End: Complemental strand, 47199120 - 47198939
Alignment:
| Q |
4 |
ggaggagcacagattcaagaagtttttgtagctcaatgaaaatacctctcctaaaagttacaaaagtggatctcaaatgaagaattccaaatgaaatatt |
103 |
Q |
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| T |
47199120 |
ggaggaacactgattcaagaagtttttgtagctcaatgaaaatacctctcctaaaagttacaaaagtggatctcaaatgaagaattccaaatgaaatatt |
47199021 |
T |
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| Q |
104 |
tcatttataataattgaagaagtacaatcactgaatgtaatgaaaataattatgagcgtaaaagataaatgcttaaactaaa |
185 |
Q |
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| T |
47199020 |
tcatttataataatggaagaagtacaataactgaatgtaatgaaaataattatgagcgtaaaagataaatggttaagctaaa |
47198939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 215 - 355
Target Start/End: Complemental strand, 47198946 - 47198803
Alignment:
| Q |
215 |
aagctaaatggcaaggatctattataatccactaaagatccttttctaatttaaa-gattgcaaagtaatacttct---aactcacttatttcaatgtaa |
310 |
Q |
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| T |
47198946 |
aagctaaatggcaaggatctattataatctactaaagatccttttctaatttaaaagattgcaa-gtaatacttcttctaactcacttatttcaatgtaa |
47198848 |
T |
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| Q |
311 |
ctttaaattcaatgcataaacctcctccagaaccaatgttgtttc |
355 |
Q |
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| T |
47198847 |
ctttaaattcaatgcataaacctcctccagaaccaatgttgtttc |
47198803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 310 - 355
Target Start/End: Complemental strand, 47186309 - 47186264
Alignment:
| Q |
310 |
actttaaattcaatgcataaacctcctccagaaccaatgttgtttc |
355 |
Q |
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| T |
47186309 |
actttaaattcaatgcataaacctcttccagaaccaatgttgtttc |
47186264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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