View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_high_44 (Length: 362)
Name: NF13975_high_44
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_high_44 |
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| [»] scaffold0176 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 359
Target Start/End: Complemental strand, 34208706 - 34208364
Alignment:
| Q |
18 |
taaaggagaaaaagactcaaagcaggtaatatctcatgcataaaaagtggcacaaaattagtgagataaactaatttgcaaaggaaatgtaagaaacata |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34208706 |
taaaggagaaaaagactcaaagcaggtaatatctcatacataaaaagtggcacaaaattagtgagataaactaatttacaaaggaaatgtaagaaacata |
34208607 |
T |
|
| Q |
118 |
tctctaattcggtcaccaaaattagtgttggtgagttaattgctgaagannnnnnnn-aataagtgacaatcaatatatacctctattatccacaagttc |
216 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
34208606 |
tctctaattcggtcaccaaaattagtgttggtgagttaattactgaagatttttttttaataagtgacaatcaatatatacctctattatccacaagttc |
34208507 |
T |
|
| Q |
217 |
tgcccacaatcccccagctcctgcatgattaatttcctggaaaaaatatgtattgaatcaataaataataagttgtcatgtcactaaccaaataactaat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34208506 |
tgcccacaatcccccagctcctgcatgattaatttcctggaaaaaatatgtattgaatcaataaataataagttgtcatgtcactaaccaaataactaat |
34208407 |
T |
|
| Q |
317 |
taagtaatctttacagtaatcaaaacatatagtataatctacc |
359 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
34208406 |
taagtaatctttacagtaatcaaaacatatattataatttacc |
34208364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 359
Target Start/End: Original strand, 34155409 - 34155754
Alignment:
| Q |
18 |
taaaggagaaaaagactcaaagcaggtaatatctcatgcataaaaagtggcacaaaattagtgagataaactaatttgcaaaggaaatgtaagaaacata |
117 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34155409 |
taaaggagaaaaagactcaaagcaggtaatatctcatacataaaaagtggcacaaaattagtgagataaactaatttacaaaggaaatgtaagaaacata |
34155508 |
T |
|
| Q |
118 |
tctctaattcggtcaccaaaattagtgttggtgagttaattgctgaagannnnnnnnaataagtgacaatcaatatatacctctattatccacaagttct |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34155509 |
tctctaattcggtcaccaaaattagtgttggtgagttaattactgaagattttttttaataagtgacaatcaatatatacctctattatccacaagttct |
34155608 |
T |
|
| Q |
218 |
gcccacaatcccccagctcctgcatgattaatttcctggaaaaaatatgt----attgaatcaataaataataagttgtcatgtcactaaccaaataact |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34155609 |
gcccacaatcccccagctcctgcatgattaatttcctggaaaaaatatgtattaattgaatcaataaataataagttgtcatgtcactaaccaaataact |
34155708 |
T |
|
| Q |
314 |
aattaagtaatctttacagtaatcaaaacatatagtataatctacc |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
34155709 |
aattaagtaatctttacagtaatcaaaacatatattataatttacc |
34155754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 359
Target Start/End: Complemental strand, 34168496 - 34168151
Alignment:
| Q |
18 |
taaaggagaaaaagactcaaagcaggtaatatctcatgcataaaaagtggcacaaaattagtgagataaactaatttgcaaaggaaatgtaagaaacata |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34168496 |
taaaggagaaaaagactcaaagcaggtaatatctcatacataaaaagtggcacaaaattagtgagataaactaatttacaaaggaaatgtaagaaacata |
34168397 |
T |
|
| Q |
118 |
tctctaattcggtcaccaaaattagtgttggtgagttaattgctgaagannnnnnnnaataagtgacaatcaatatatacctctattatccacaagttct |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34168396 |
tctctaattcggtcaccaaaattagtgttggtgagttaattactgaagattttttttaataagtgacaatcaatatatacctctattatccacaagttct |
34168297 |
T |
|
| Q |
218 |
gcccacaatcccccagctcctgcatgattaatttcctggaaaaaatatgt----attgaatcaataaataataagttgtcatgtcactaaccaaataact |
313 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34168296 |
gcccacaatcccccagctcctgcatgattaatttcctggaaaaaatatgtattaattgaatcaataaataataagttgtcatgtcactaaccaaataact |
34168197 |
T |
|
| Q |
314 |
aattaagtaatctttacagtaatcaaaacatatagtataatctacc |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||| |
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|
| T |
34168196 |
aattaagtaatctttacagtaatcaaaacatatattataatttacc |
34168151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 359
Target Start/End: Complemental strand, 28818 - 28473
Alignment:
| Q |
18 |
taaaggagaaaaagactcaaagcaggtaatatctcatgcataaaaagtggcacaaaattagtgagataaactaatttgcaaaggaaatgtaagaaacata |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
28818 |
taaaggagaaaaagactcaaagcaggtaatatctcatacataaaaagtggcacaaaattagtgagataaactaatttacaaaggaaatgtaagaaacata |
28719 |
T |
|
| Q |
118 |
tctctaattcggtcaccaaaattagtgttggtgagttaattgctgaagannnnnnnnaataagtgacaatcaatatatacctctattatccacaagttct |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28718 |
tctctaattcggtcaccaaaattagtgttggtgagttaattactgaagattttttttaataagtgacaatcaatatatacctctattatccacaagttct |
28619 |
T |
|
| Q |
218 |
gcccacaatcccccagctcctgcatgattaatttcctggaaaaaatatgt----attgaatcaataaataataagttgtcatgtcactaaccaaataact |
313 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28618 |
gcccacaatcccccagctcctgcatgattaatttcctggaaaaaatatgtattaattgaatcaataaataataagttgtcatgtcactaaccaaataact |
28519 |
T |
|
| Q |
314 |
aattaagtaatctttacagtaatcaaaacatatagtataatctacc |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||| |
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|
| T |
28518 |
aattaagtaatctttacagtaatcaaaacatatattataatttacc |
28473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176; HSP #2
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 359
Target Start/End: Complemental strand, 35319 - 34974
Alignment:
| Q |
18 |
taaaggagaaaaagactcaaagcaggtaatatctcatgcataaaaagtggcacaaaattagtgagataaactaatttgcaaaggaaatgtaagaaacata |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
35319 |
taaaggagaaaaagactcaaagcaggtaatatctcatacataaaaagtggcacaaaattagtgagataaactaatttacaaaggaaatgtaagaaacata |
35220 |
T |
|
| Q |
118 |
tctctaattcggtcaccaaaattagtgttggtgagttaattgctgaagannnnnnnnaataagtgacaatcaatatatacctctattatccacaagttct |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35219 |
tctctaattcggtcaccaaaattagtgttggtgagttaattactgaagattttttttaataagtgacaatcaatatatacctctattatccacaagttct |
35120 |
T |
|
| Q |
218 |
gcccacaatcccccagctcctgcatgattaatttcctggaaaaaatatgt----attgaatcaataaataataagttgtcatgtcactaaccaaataact |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35119 |
gcccacaatcccccagctcctgcatgattaatttcctggaaaaaatatgtattaattgaatcaataaataataagttgtcatgtcactaaccaaataact |
35020 |
T |
|
| Q |
314 |
aattaagtaatctttacagtaatcaaaacatatagtataatctacc |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
35019 |
aattaagtaatctttacagtaatcaaaacatatattataatttacc |
34974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 254
Target Start/End: Original strand, 38726658 - 38726704
Alignment:
| Q |
208 |
cacaagttctgcccacaatcccccagctcctgcatgattaatttcct |
254 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||| ||||| |||| |
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|
| T |
38726658 |
cacaagttctgcccataatcccccagctccagcatggttaatctcct |
38726704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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