View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_high_50 (Length: 343)
Name: NF13975_high_50
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_high_50 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 6e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 23 - 326
Target Start/End: Original strand, 40059782 - 40060090
Alignment:
| Q |
23 |
taggggataaagtgattgccccattgaccagcgattcaatcaaaacaaaacaaccgaggtaacaaacaaaccataatc-----acagtacttagtggagc |
117 |
Q |
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| T |
40059782 |
taggggataaagtgattgccccattgaccagcgattcaatcaaaacaaagcaaccgaggtaacaaacaaaccataatctaaaaacagtacttagtggagc |
40059881 |
T |
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| Q |
118 |
tagcactacatgtaaatgttatctnnnnnnnngcactacatgtaaatgtagatgcgcatgcatgnnnnnnnnnnnnn-atcttggactgaaaattatcat |
216 |
Q |
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| T |
40059882 |
tagcactacatgtaa-tgttatctaaaaaaaagcactacatgtaaatgtagatgcgcatgcatgttttttttgtttttatcttggactgaaaattatcat |
40059980 |
T |
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| Q |
217 |
gtggctgttgtatgtgagcaatgaatcatcgatcaagacatagacattggacataacattgacacaagatcgtcactaataatgatatgttcaggggtcg |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| | |||| ||||| ||||||||||||||||||||| |
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| T |
40059981 |
gtggctgttgtatgtgagcaatgaatcatcgatcaagacatagacgttagacataacattgacacgacatcgccactagtaatgatatgttcaggggtcg |
40060080 |
T |
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| Q |
317 |
tgttggtgct |
326 |
Q |
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|||||||||| |
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| T |
40060081 |
tgttggtgct |
40060090 |
T |
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