View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_high_53 (Length: 334)
Name: NF13975_high_53
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_high_53 |
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| [»] scaffold0025 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 12 - 315
Target Start/End: Original strand, 29799690 - 29799993
Alignment:
| Q |
12 |
agagagaagaagggttaacactatcttatactccataaagctcaagtttctaccaacacacattcttcctccaaatccaaaaggtaagtatcccattttt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29799690 |
agagagaagaagggttaacactatcttatactccataaagctcaagtttctaccaacacacattcttcctccaaatccaaaaggtaagtatcccattttt |
29799789 |
T |
|
| Q |
112 |
tggttgcatccaccatttacatcatccatgaatctttctggtcgaaactcatttacattttctccccacaatgatgagtcatggtgcattgcaacaacgt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29799790 |
tggttgcatccaccatttacatcatccatgaatctttctggtcgaaactcatttacattttctccccacaatgatgagtcatggtgcattgcaacaacgt |
29799889 |
T |
|
| Q |
212 |
cgatccacatattggtcccattaggaattgttagattatcaagtttaatgtcttctctagattgcctttgaacatttggtgctgttgggtagagcctcaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29799890 |
cgatccacatattggtcccattaggaattgttagattatcaagtttaatgtcttctctagattgcctttgaacatttggtgctgttgggtagagcctcaa |
29799989 |
T |
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| Q |
312 |
agct |
315 |
Q |
| |
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|||| |
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| T |
29799990 |
agct |
29799993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 12 - 302
Target Start/End: Original strand, 45419935 - 45420225
Alignment:
| Q |
12 |
agagagaagaagggttaacactatcttatactccataaagctcaagtttctaccaacacacattcttcctccaaatccaaaaggtaagtatcccattttt |
111 |
Q |
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||||||||| | |||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| || ||||| || |
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| T |
45419935 |
agagagaagtattgttaacactatcttgtactccataaatgtcaagtttctaccaacacacattctccctccaaatccaaaaggtaaataccccatcttg |
45420034 |
T |
|
| Q |
112 |
tggttgcatccaccatttacatcatccatgaatctttctggtcgaaactcatttacattttctccccacaatgatgagtcatggtgcattgcaacaacgt |
211 |
Q |
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|| |||||||||||||| |||||||||||||| || |||||| || ||||| |||| |||||||| ||| || |||||||||||| || || || | |
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| T |
45420035 |
tgtttgcatccaccattaacatcatccatgaacctctctggtttgaaatcattcacatcatctccccataattctgggtcatggtgcatcgctactacat |
45420134 |
T |
|
| Q |
212 |
cgatccacatattggtcccattaggaattgttagattatcaagtttaatgtcttctctagattgcctttgaacatttggtgctgttgggta |
302 |
Q |
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| |||||||| ||||| |||||||| | ||||| || ||||| || |||||||||||| | ||| ||||| ||||||||||||| |||||| |
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| T |
45420135 |
caatccacatgttggttccattaggcactgttacatcatcaacttgaatgtcttctcttgcttgtctttgcacatttggtgctggtgggta |
45420225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 12 - 302
Target Start/End: Original strand, 45410626 - 45410916
Alignment:
| Q |
12 |
agagagaagaagggttaacactatcttatactccataaagctcaagtttctaccaacacacattcttcctccaaatccaaaaggtaagtatcccattttt |
111 |
Q |
| |
|
||||||||| | |||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| || ||||| || |
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| T |
45410626 |
agagagaagtattgttaacactatcttgtactccataaatgtcaagtttctaccaacacacattctccctccaaatccaaaaggtaaataccccatcttg |
45410725 |
T |
|
| Q |
112 |
tggttgcatccaccatttacatcatccatgaatctttctggtcgaaactcatttacattttctccccacaatgatgagtcatggtgcattgcaacaacgt |
211 |
Q |
| |
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|| |||||||||||||| |||||||||||||| || |||||| |||||||| |||| |||||||| ||| || |||||||||||| || || || | |
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| T |
45410726 |
tgtttgcatccaccattaacatcatccatgaacctctctggtttgaactcattcacatcatctccccataattctgggtcatggtgcatcgctactacat |
45410825 |
T |
|
| Q |
212 |
cgatccacatattggtcccattaggaattgttagattatcaagtttaatgtcttctctagattgcctttgaacatttggtgctgttgggta |
302 |
Q |
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| |||||||| || || |||||||| | ||||| || ||||| || ||| |||||||| | ||| ||||| ||||||||||||| |||||| |
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| T |
45410826 |
caatccacatgtttgttccattaggcactgttacatcatcaacttgaatatcttctcttgcttgtctttgcacatttggtgctggtgggta |
45410916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 12 - 302
Target Start/End: Original strand, 26835126 - 26835416
Alignment:
| Q |
12 |
agagagaagaagggttaacactatcttatactccataaagctcaagtttctaccaacacacattcttcctccaaatccaaaaggtaagtatcccattttt |
111 |
Q |
| |
|
||||||||| | ||||| |||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| || ||||| || |
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| T |
26835126 |
agagagaagcattgttaatactatcttgtactccataaatgtcaagtttctaccaacacacattctccctccaaatccaaaaggtaaataccccatcttg |
26835225 |
T |
|
| Q |
112 |
tggttgcatccaccatttacatcatccatgaatctttctggtcgaaactcatttacattttctccccacaatgatgagtcatggtgcattgcaacaacgt |
211 |
Q |
| |
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|| |||||||||||||| |||||||| | ||| || |||||| |||||||| |||| |||||||| ||| | ||||||||||||||| || || | |
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| T |
26835226 |
tgtttgcatccaccattaacatcatcgacgaacctctctggtttgaactcattcacatcatctccccataattcagggtcatggtgcattgctactacat |
26835325 |
T |
|
| Q |
212 |
cgatccacatattggtcccattaggaattgttagattatcaagtttaatgtcttctctagattgcctttgaacatttggtgctgttgggta |
302 |
Q |
| |
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| |||||||| ||||| |||||||| | ||||| |||||||| ||||||||||||||| | ||| ||||| |||||||||| || |||||| |
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| T |
26835326 |
caatccacatgttggttccattaggcactgttacattatcaactttaatgtcttctcttgtttgtctttgcacatttggtgatggtgggta |
26835416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 63457 - 63677
Alignment:
| Q |
16 |
agaagaagggttaacactatcttatactccataaagctcaagtttctaccaacacacattcttcctccaaatccaaaaggtaagtatcccattttttggt |
115 |
Q |
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||||| |||||||||||||| ||||||||||| ||| ||||||| ||||||| ||| ||| |||||||| |||||||| ||||| |||||| | |||| |
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| T |
63457 |
agaagtagggttaacactatgttatactccatgaagatcaagttcctaccaatacatgctctccctccaaaaccaaaaggcaagtaccccattgtgtggt |
63556 |
T |
|
| Q |
116 |
tgcatccaccatttacatcatccatgaatctttctggtcgaaactcatttacattttctccccacaatgatgagtcatggtgcattgcaacaacgtcgat |
215 |
Q |
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|||| | ||||| |||||| |||||| || |||||| ||||| ||| ||| | ||||| |||| ||||||||||||||| |||||||| || |
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| T |
63557 |
ggcattccccattggcatcattcatgaacctctctggtttaaacttgtttgcatcattcccccataatgtcatgtcatggtgcattgctacaacgtcaat |
63656 |
T |
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| Q |
216 |
ccacatattggtcccattagg |
236 |
Q |
| |
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||| || |||||||| ||||| |
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| T |
63657 |
ccaaatgttggtccctttagg |
63677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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