View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_high_61 (Length: 311)
Name: NF13975_high_61
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_high_61 |
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Alignment Details
Target: chr7 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 101 - 291
Target Start/End: Complemental strand, 24620104 - 24619913
Alignment:
| Q |
101 |
tatatcatttattaacaactatcaactaacttgg-tgaccttccatcaatttatattgtttaaatgatatcttgagaggttaaaagagggttgattttca |
199 |
Q |
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| T |
24620104 |
tatatcatttattaacaactatcaactaactttgctgaccttccatcaatttatattgtttaaatgatatcttgagaggttaaaagagggttgattttca |
24620005 |
T |
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| Q |
200 |
tgtttggatatgattaaatgtccctattttgtggaacaaacgttaataggtgatggaaactagccannnnnnncttttcttgtaatgacagt |
291 |
Q |
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| T |
24620004 |
tgtttggatatgattaaatgtccctattttgtggaacaaacgttaataggtgatggaaactagccatttttttcttttcttgtaatgacagt |
24619913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 22488496 - 22488595
Alignment:
| Q |
1 |
gaataaataattaataaaatgaaaaacatttcatcaaatggtttgaaatatgtcgtgtgcattcgtgcatgttattctgtcgtgttatcaagcatttttc |
100 |
Q |
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| T |
22488496 |
gaataaataattaataaaatgaaaaacatttcatcaaatggtttgaaatatgtcgtgtgcattcgtgcatgttattctgtcgtgctatcaagcatttttc |
22488595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 8558004 - 8558106
Alignment:
| Q |
1 |
gaataaataattaataaaatgaaaaacatttcatcaaatggtttgaaatatgtcgtgtgcattcgtgcatgttattctgtcgtgttatcaagcatttttc |
100 |
Q |
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| T |
8558004 |
gaataaataattaataaaatgaaaaacatttcatcaaatggtttgaaatatgtcgtgtgcattcatgcatgttattctgtcgtgctatcaagcatttttc |
8558103 |
T |
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| Q |
101 |
tat |
103 |
Q |
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||| |
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| T |
8558104 |
tat |
8558106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 51935479 - 51935527
Alignment:
| Q |
53 |
tcgtgtgcattcgtgcatgttattctgtcgtgttatcaagcatttttct |
101 |
Q |
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| T |
51935479 |
tcgtgtgccttcgtgcttgttagtatgtcgtgctatcaagcatttttct |
51935527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 33508262 - 33508360
Alignment:
| Q |
2 |
aataaataattaataaaatgaaaaacatttcatcaaatggtttgaaatatgtcgtgtgcattcgtgcatgttattctgtcgtgttatcaagcatttttc |
100 |
Q |
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| T |
33508262 |
aataaataattaataaaatgaaaaacgattcatcaaacggcttaagatatgtcgtgtgccttcgtgcttgtcactatgtcgtgctatcaagcatttttc |
33508360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 8402973 - 8403021
Alignment:
| Q |
53 |
tcgtgtgcattcgtgcatgttattctgtcgtgttatcaagcatttttct |
101 |
Q |
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| T |
8402973 |
tcgtgtgccttcgtgcttgttagtatgtcgtgctatcaagcatttttct |
8403021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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