View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13975_high_72 (Length: 258)
Name: NF13975_high_72
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_high_72 |
 | |
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| [»] chr4 (3 HSPs) |
| |
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| [»] chr3 (4 HSPs) |
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| [»] scaffold0036 (2 HSPs) |
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| [»] scaffold0236 (1 HSPs) |
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| [»] chr7 (3 HSPs) |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 26474858 - 26475116
Alignment:
| Q |
1 |
ccgatcacttttgattcgagatcgagagttagtttcttatctcaagctgttttggcgtgtttttgtgtcttcttctacagactgaggattgatcggtggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || || || |||||||||||||||||||||| |
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|
| T |
26474858 |
ccgatcacttttgattcgagatcgagagttagtttcttgtctcaagctgttttggcgtgtttttgtgtttttttttatagactgaggattgatcggtggt |
26474957 |
T |
|
| Q |
101 |
ggaagttgaattggttcagaatttcgactaagttggggtgatgaggtgaggtgttgtttgtggtgatgagaagacgaggtgttgttgtttgggtttttca |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
26474958 |
ggaagttgaattggttcagaatttcggctaagttggggtgatgaggtgaggtgttgtttgtggtgatgagaagacgaggtgttgttgtttgggtttttta |
26475057 |
T |
|
| Q |
201 |
gtgggtgtgttgg-ttttgtggagtggctttgatgtgagtagcaggcgataggtgtttg |
258 |
Q |
| |
|
||||||||||||| |||| | ||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
26475058 |
gtgggtgtgttggtttttttagagtggctttgatgtgaatatcaggcgataggtgtttg |
26475116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 209
Target Start/End: Original strand, 32057275 - 32057344
Alignment:
| Q |
139 |
tgatgaggtgaggtgttgtttgtggtgatgagaagacgaggtgttgttgtttgggtttttcagtgggtgtg |
209 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||| || || |||||||| ||| |||| |||||||||| |
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|
| T |
32057275 |
tgataaggtgaggtgttgtttgtggtaatgagaaggtgatgttttgttgttagggatttt-agtgggtgtg |
32057344 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 4305748 - 4305780
Alignment:
| Q |
2 |
cgatcacttttgattcgagatcgagagttagtt |
34 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
|
|
| T |
4305748 |
cgatcacttttgattcgagatcgggagttagtt |
4305780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 107 - 258
Target Start/End: Original strand, 12220793 - 12220944
Alignment:
| Q |
107 |
tgaattggttcagaatttcgactaagttggggtgatgaggtgaggtgttgtttgtggtgatgagaagacgaggtgttgttgtttgggtttttcagtgggt |
206 |
Q |
| |
|
||||||||||| || ||||| |||||||| ||||||||||||||||||||||||||||||||||||| || || | ||||||| |||||||||||| | | |
|
|
| T |
12220793 |
tgaattggttcggagtttcggctaagttgtggtgatgaggtgaggtgttgtttgtggtgatgagaaggcggggagctgttgttagggtttttcagtagat |
12220892 |
T |
|
| Q |
207 |
gtgttggttttgtggagtggctttgatgtgagtagcaggcgataggtgtttg |
258 |
Q |
| |
|
||||| |||| ||||||||||||||| |||||||||| ||||| ||||||| |
|
|
| T |
12220893 |
gtgtttcttttctggagtggctttgatttgagtagcagacgatatgtgtttg |
12220944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 101 - 258
Target Start/End: Complemental strand, 7424884 - 7424727
Alignment:
| Q |
101 |
ggaagttgaattggttcagaatttcgactaagttggggtgatgaggtgaggtgttgtttgtggtgatgagaagacgaggtgttgttgtttgggtttttca |
200 |
Q |
| |
|
||||| ||| ||||||| |||||||| |||||||| |||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
7424884 |
ggaagctgatttggttcggaatttcggctaagttgtggtgatgatgtgaggtgttgtttgtggtgatgagaaggcgaggttacgttgtttgggtttttca |
7424785 |
T |
|
| Q |
201 |
gtgggtgtgttggttttgtggagtggctttgatgtgagtagcaggcgataggtgtttg |
258 |
Q |
| |
|
| | ||||||| |||| || | |||||||| |||||||||||| ||||||||||||| |
|
|
| T |
7424784 |
gcgaatgtgttgcttttttgaattggctttggtgtgagtagcagacgataggtgtttg |
7424727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 823494 - 823461
Alignment:
| Q |
1 |
ccgatcacttttgattcgagatcgagagttagtt |
34 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
823494 |
ccgatcacttttgattcgagatcgagagtcagtt |
823461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 45398818 - 45398846
Alignment:
| Q |
1 |
ccgatcacttttgattcgagatcgagagt |
29 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
45398818 |
ccgatcacttttgattcgagatcgagagt |
45398846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 50 - 258
Target Start/End: Complemental strand, 64290 - 64088
Alignment:
| Q |
50 |
ttttggcgtgtttttgtgtcttcttctacagactgaggattgatcggtggtggaagttgaattggttcagaatttcgactaagttggggtgatgaggtga |
149 |
Q |
| |
|
|||| |||| |||| | ||||||| | |||||||||||||||||||||||||||| |||||| |||| ||| |||| ||| |||| ||||||||||||| |
|
|
| T |
64290 |
tttttgcgtattttggcgtcttctccgacagactgaggattgatcggtggtggaatctgaattagttcggaaattcggctatgttgtggtgatgaggtga |
64191 |
T |
|
| Q |
150 |
ggtgt-tgtttgtggtgatgagaagacgaggtgttgttgtttgggtttttcagtgggtgtgttggttttgtggagtggctttgatgtgagtagcag-gcg |
247 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||||||| |||||| |||| |||| |||||||||||||||||||||||| | ||| |
|
|
| T |
64190 |
ggtgtctgtttgtggtgatgagaaggggaggtgttgttgtttgggattttca--------gttgattttttggagtggctttgatgtgagtagccgcgcg |
64099 |
T |
|
| Q |
248 |
ataggtgtttg |
258 |
Q |
| |
|
||||| ||||| |
|
|
| T |
64098 |
ataggcgtttg |
64088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 50 - 258
Target Start/End: Complemental strand, 69432 - 69230
Alignment:
| Q |
50 |
ttttggcgtgtttttgtgtcttcttctacagactgaggattgatcggtggtggaagttgaattggttcagaatttcgactaagttggggtgatgaggtga |
149 |
Q |
| |
|
|||| |||| |||| | ||||||| | |||||||||||||||||||||||||||| |||||| |||| ||| |||| ||| |||| ||||||||||||| |
|
|
| T |
69432 |
tttttgcgtattttggcgtcttctccgacagactgaggattgatcggtggtggaatctgaattagttcggaaattcggctatgttgtggtgatgaggtga |
69333 |
T |
|
| Q |
150 |
ggtgt-tgtttgtggtgatgagaagacgaggtgttgttgtttgggtttttcagtgggtgtgttggttttgtggagtggctttgatgtgagtagcag-gcg |
247 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||||||| |||||| |||| |||| |||||||||||||||||||||||| | ||| |
|
|
| T |
69332 |
ggtgtctgtttgtggtgatgagaaggggaggtgttgttgtttgggattttca--------gttgattttttggagtggctttgatgtgagtagccgcgcg |
69241 |
T |
|
| Q |
248 |
ataggtgtttg |
258 |
Q |
| |
|
||||| ||||| |
|
|
| T |
69240 |
ataggcgtttg |
69230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 258
Target Start/End: Complemental strand, 10452 - 10201
Alignment:
| Q |
9 |
ttttgattcgagatcgagagttagtttcttatctcaagctgttttggcgtgtttttgtgtcttcttctacagactgaggattgatcggtggtggaagttg |
108 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||| || |||||| |||||| ||||||||| ||| || |||||||||| |||||||||| |
|
|
| T |
10452 |
ttttgattcgagatcgagagtcagtttcttgactcaagttg-tttggcttgttttggtgtcttctctaacaaaccgaggattgattggtggtggaatcca |
10354 |
T |
|
| Q |
109 |
aattggttcagaatttcgactaagttggggtgatg---aggtgaggtgttgtttgtggtgatgagaagacgaggtgttgttgtttgggtttttcagtggg |
205 |
Q |
| |
|
||| ||||| || || || ||||| || |||| ||||||| || |||| ||||||||||||| |||||| ||||||| ||| |||| ||| |
|
|
| T |
10353 |
aatgagttcataaatttagctcagttgaggagatgagaaggtgagttgaggtttttggtgatgagaaggtgaggtgctgttgttaggggggttcaccggg |
10254 |
T |
|
| Q |
206 |
tgtgttggttttgtggagtggctttgatgtgagtagcaggcgataggtgtttg |
258 |
Q |
| |
|
|||| || |||| ||||||||||||| ||||||||| ||||| || |||||| |
|
|
| T |
10253 |
tgtgatgattttttggagtggctttggtgtgagtagtgggcgacagatgtttg |
10201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 151 - 258
Target Start/End: Original strand, 28006766 - 28006872
Alignment:
| Q |
151 |
gtgttgtttgtggtgatgagaagacgaggtgttgttgtttgggtttttcagtgggtgtgttggttttgtggagtggctttgatgtgagtagcaggcgata |
250 |
Q |
| |
|
||||||||||||||| ||||||| ||||| |||||||| ||| ||| || ||||||| || |||| | ||||||||||| |||||||||| || |||| |
|
|
| T |
28006766 |
gtgttgtttgtggtgttgagaaggtgaggtattgttgttaggggtttg-agcgggtgtgatgattttcttgagtggctttggtgtgagtagcgggtgata |
28006864 |
T |
|
| Q |
251 |
ggtgtttg |
258 |
Q |
| |
|
|||||||| |
|
|
| T |
28006865 |
ggtgtttg |
28006872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 3478374 - 3478407
Alignment:
| Q |
1 |
ccgatcacttttgattcgagatcgagagttagtt |
34 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |
|
|
| T |
3478374 |
ccgatcacttttgattcgagatcgggagttagtt |
3478407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 46262178 - 46262141
Alignment:
| Q |
1 |
ccgatcacttttgattcgagatcgagagttagtttctt |
38 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
46262178 |
ccgatcacttttgattcgagatcgggagctagtttctt |
46262141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 38
Target Start/End: Complemental strand, 28765659 - 28765624
Alignment:
| Q |
3 |
gatcacttttgattcgagatcgagagttagtttctt |
38 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |
|
|
| T |
28765659 |
gatcacttttgattcgagatcgagagtcagtttctt |
28765624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 26046023 - 26045991
Alignment:
| Q |
1 |
ccgatcacttttgattcgagatcgagagttagt |
33 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
26046023 |
ccgatcacttttgattcgagatcgggagttagt |
26045991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 258
Target Start/End: Complemental strand, 2660754 - 2660639
Alignment:
| Q |
144 |
aggtgaggtgttgtttgtggtgatgagaagacgaggtgttgttgtt-tgggtttttcagtgggtgtgttggttttgtggagtggctttgatgtgagtagc |
242 |
Q |
| |
|
|||||||||| ||||| ||||||||||||| || ||| ||||||| ||| ||| ||||||||| ||||||| |||||| |||||| ||||||||| |
|
|
| T |
2660754 |
aggtgaggtgatgtttctggtgatgagaaggtgatgtgctgttgttaggggggttttagtgggtgtaatggttttttggagtagctttggtgtgagtagt |
2660655 |
T |
|
| Q |
243 |
aggcgataggtgtttg |
258 |
Q |
| |
|
||| ||| ||||||| |
|
|
| T |
2660654 |
aggtgatgagtgtttg |
2660639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 46692878 - 46692845
Alignment:
| Q |
1 |
ccgatcacttttgattcgagatcgagagttagtt |
34 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |
|
|
| T |
46692878 |
ccgatcacttttgattcgagatcgggagttagtt |
46692845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 27031899 - 27031871
Alignment:
| Q |
1 |
ccgatcacttttgattcgagatcgagagt |
29 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
27031899 |
ccgatcacttttgattcgagatcgagagt |
27031871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 188
Target Start/End: Original strand, 30655733 - 30655765
Alignment:
| Q |
156 |
gtttgtggtgatgagaagacgaggtgttgttgt |
188 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |
|
|
| T |
30655733 |
gtttgtggtgatgagaagatgaggtgttgttgt |
30655765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 20701862 - 20701829
Alignment:
| Q |
1 |
ccgatcacttttgattcgagatcgagagttagtt |
34 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |
|
|
| T |
20701862 |
ccgatcacttttgattcgagatcgggagttagtt |
20701829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 34105435 - 34105472
Alignment:
| Q |
1 |
ccgatcacttttgattcgagatcgagagttagtttctt |
38 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
34105435 |
ccgatcacttttgattcgagatcgggagtcagtttctt |
34105472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 13423488 - 13423516
Alignment:
| Q |
1 |
ccgatcacttttgattcgagatcgagagt |
29 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
13423488 |
ccgatcacttttgattcgagatcgagagt |
13423516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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