View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_high_80 (Length: 248)
Name: NF13975_high_80
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_high_80 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 7 - 248
Target Start/End: Original strand, 1584250 - 1584491
Alignment:
| Q |
7 |
aaatgttaatccaagcaaccctcttagacccaagtatctttgcacaaatgtctttgtggaagcatcattccacaatgcttgatcagattgaagaattcca |
106 |
Q |
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| T |
1584250 |
aaatgttaatccaagcaaccctcttagacccaagtatctttgcacaaatgtctttgtggaagcatcattccacaatgcttgatcagattgaagaattcca |
1584349 |
T |
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| Q |
107 |
cgtccgttcctcagattagcatagtaagaattatcaaatttattttgacttccagtatccaatgcaattctgtttgtagcaccactgttttgaggacaaa |
206 |
Q |
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| T |
1584350 |
cgtccgttcctcagattagcatagtaagaattatcaaatttattttgacttccagtatccaatgcaattctgtttgtagcaccactgttttgaggacaaa |
1584449 |
T |
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| Q |
207 |
gtgtttgtaattgtgaaagaaatgaagggtctattgaaggat |
248 |
Q |
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| T |
1584450 |
gtgtttgtaattgtgaaagaaatgaagggtctattgaaggat |
1584491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 7 - 248
Target Start/End: Complemental strand, 1593633 - 1593392
Alignment:
| Q |
7 |
aaatgttaatccaagcaaccctcttagacccaagtatctttgcacaaatgtctttgtggaagcatcattccacaatgcttgatcagattgaagaattcca |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1593633 |
aaatgttaatccaagcaaccctcttagacccaagtatctttgcacaaatgtctttgtggaagcatcattccacaatgcttgatcagattgaagaattcca |
1593534 |
T |
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| Q |
107 |
cgtccgttcctcagattagcatagtaagaattatcaaatttattttgacttccagtatccaatgcaattctgtttgtagcaccactgttttgaggacaaa |
206 |
Q |
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| T |
1593533 |
cgtccgttcctcagattagcatagtaagaattatcaaatttattttgacttccagtatccaatgcaattctgtttgtagcaccactgttttgaggacaaa |
1593434 |
T |
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| Q |
207 |
gtgtttgtaattgtgaaagaaatgaagggtctattgaaggat |
248 |
Q |
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| T |
1593433 |
gtgtttgtaattgtgaaagaaatgaagggtctattgaaggat |
1593392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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