View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_high_84 (Length: 243)
Name: NF13975_high_84
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_high_84 |
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Alignment Details
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 54878845 - 54879077
Alignment:
| Q |
1 |
aataatgatggatctcaataataatatattgagatgatacacaaaatttgagtcctcaatcccagcctcacatgcttttaaaattaattttggtaagacc |
100 |
Q |
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| T |
54878845 |
aataatgatggatctcaataataatatattgagatgatacacaaaatttgagtcctcaatcccagcctcacatgcttttaaaattaattttggtaagacc |
54878944 |
T |
|
| Q |
101 |
ctccnnnnnnnnnnnnnaaaacggtatgcaatccatgtgaggaagaatatatattggaactataataagattta----------gatgaaaagtgcaatg |
190 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
54878945 |
ctcc--atatatatataaaaacagtatgcaatccatgtgaggaagaatatatattggaactataataagatttaaatacacaatgatgaaaagtgcaatg |
54879042 |
T |
|
| Q |
191 |
ttcttttcttatcttctagtctctaccattttgat |
225 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
54879043 |
ttcttttcttatcttctagtctctaccattttgat |
54879077 |
T |
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