View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_high_88 (Length: 238)
Name: NF13975_high_88
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_high_88 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 1575656 - 1575862
Alignment:
| Q |
15 |
caaaggcaacgagtggaaatcatgtgatggagagttaaacatgggagagggaattcaattggttacaggaaggaaggcataaataaaaattcaagggtgg |
114 |
Q |
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| T |
1575656 |
caaaggtaacgagtggaaatcatgtgatggagagttaaacatgggagagggaattcaattggttacaggaaggaaggcataaataaaaattcaagggtgg |
1575755 |
T |
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| Q |
115 |
agattggttcgtcgcttctcgtgtgtgtatattgttgttccaaagagcattttccataaaagaaatatgaagaaagaagtgttggttattttgaaactac |
214 |
Q |
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| T |
1575756 |
agaatggttcgtcgcttctcgtgtgtgtgtattgttgttccaaagagcattttccataaaagaaatatgaagaaagaagtgttggttattttgaaactac |
1575855 |
T |
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| Q |
215 |
caaaatg |
221 |
Q |
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| T |
1575856 |
caaaatg |
1575862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 45 - 167
Target Start/End: Complemental strand, 2190793 - 2190679
Alignment:
| Q |
45 |
agagttaaacatgggagagggaattcaattggttacaggaaggaaggcataaataaaaattcaagggtggagattggttcgtcgcttctcgtgtgtgtat |
144 |
Q |
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| T |
2190793 |
agagtaaaacatgggagagagaattcaattggttacaggaaggaa--------taaaaatccaagggttgtgaatggttcgtcgcttctcgtgcgtgtat |
2190702 |
T |
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| Q |
145 |
attgttgttccaaagagcatttt |
167 |
Q |
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| T |
2190701 |
attgtcgtactaaagagcatttt |
2190679 |
T |
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