View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_high_89 (Length: 238)
Name: NF13975_high_89
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_high_89 |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 99 - 232
Target Start/End: Original strand, 50128782 - 50128915
Alignment:
| Q |
99 |
aactctttagttacaaacagtttcattttttatgaagtcaaattatcattgataacaaaacatttttaacgattgatgcattggtttggtgaccacaatc |
198 |
Q |
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| T |
50128782 |
aactctttagttacaaacagtttcattttttatgaagtcaaattatcattgataacaaaacatttttaacgattgatgcattggtttggtgaccacaatc |
50128881 |
T |
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| Q |
199 |
ttgcacttctcatgtaacaatttgagtgtctgtg |
232 |
Q |
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| T |
50128882 |
ttgcacttctcatgtaacaatttgagtgtctgtg |
50128915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 99 - 165
Target Start/End: Original strand, 50125031 - 50125098
Alignment:
| Q |
99 |
aactctttagttacaaacagtttcattttttatgaagtcaaattatca-ttgataacaaaacattttt |
165 |
Q |
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| T |
50125031 |
aactcttcagttacaaacaaattcattttttatgaagtcaaattatcatttgataacaaaacattttt |
50125098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 50128709 - 50128757
Alignment:
| Q |
17 |
acttccatgtatgctttcatcttctatcaagacaacgtcaatttttttt |
65 |
Q |
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| T |
50128709 |
acttccatgcatcctttcatcttctatcaagacaacgtcagtttttttt |
50128757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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