View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13975_high_9 (Length: 578)

Name: NF13975_high_9
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13975_high_9
NF13975_high_9
[»] chr2 (11 HSPs)
chr2 (10-544)||(43163329-43163865)
chr2 (10-242)||(43173306-43173541)
chr2 (351-412)||(33197331-33197393)
chr2 (364-404)||(33267621-33267662)
chr2 (352-407)||(32694134-32694189)
chr2 (362-404)||(33087701-33087743)
chr2 (352-404)||(11393459-11393512)
chr2 (352-404)||(11410120-11410173)
chr2 (352-389)||(26522717-26522754)
chr2 (507-544)||(43173068-43173105)
chr2 (349-389)||(5133712-5133752)
[»] chr8 (3 HSPs)
chr8 (351-406)||(14482124-14482180)
chr8 (351-406)||(39392753-39392809)
chr8 (363-406)||(8536152-8536196)
[»] chr7 (5 HSPs)
chr7 (351-406)||(24975826-24975882)
chr7 (363-412)||(45078209-45078259)
chr7 (351-388)||(1418372-1418409)
chr7 (351-406)||(5373147-5373203)
chr7 (362-413)||(11721329-11721381)
[»] scaffold0590 (1 HSPs)
scaffold0590 (351-412)||(1166-1228)
[»] scaffold0275 (1 HSPs)
scaffold0275 (351-412)||(2747-2809)
[»] chr6 (6 HSPs)
chr6 (229-294)||(32976027-32976093)
chr6 (351-412)||(2514618-2514680)
chr6 (363-404)||(31668789-31668831)
chr6 (362-410)||(3169348-3169397)
chr6 (363-411)||(29249391-29249440)
chr6 (351-403)||(29958002-29958054)
[»] chr5 (9 HSPs)
chr5 (351-405)||(12407753-12407807)
chr5 (352-412)||(26516214-26516275)
chr5 (351-406)||(20982227-20982283)
chr5 (351-412)||(37063166-37063228)
chr5 (352-404)||(13224353-13224406)
chr5 (351-407)||(35095875-35095932)
chr5 (351-402)||(7096219-7096271)
chr5 (353-412)||(10391269-10391329)
chr5 (363-406)||(11684345-11684389)
[»] chr4 (7 HSPs)
chr4 (351-404)||(36734817-36734871)
chr4 (351-407)||(19422339-19422396)
chr4 (362-404)||(4191663-4191706)
chr4 (363-404)||(2980575-2980617)
chr4 (351-410)||(32724037-32724097)
chr4 (362-405)||(41050619-41050663)
chr4 (362-401)||(47970245-47970285)
[»] chr3 (3 HSPs)
chr3 (362-411)||(41028954-41029004)
chr3 (363-407)||(34759631-34759675)
chr3 (351-406)||(44374736-44374792)
[»] scaffold0654 (1 HSPs)
scaffold0654 (363-405)||(6741-6784)
[»] scaffold0014 (1 HSPs)
scaffold0014 (363-405)||(116660-116703)
[»] chr1 (2 HSPs)
chr1 (362-407)||(870966-871012)
chr1 (362-401)||(13037791-13037831)


Alignment Details
Target: chr2 (Bit Score: 412; Significance: 0; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 10 - 544
Target Start/End: Complemental strand, 43163865 - 43163329
Alignment:
Q  10 attatacttgggaaggaaggaaaattccatgttgtcactggcatttgctggaattgatgttgttcgcatcacattggagggtggtaccggcgtaaagctg 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  43163865 attatacttgggaaggaaggaaaattccatgttgtcactggcatttgctggaattgctgttgttcgcatcacattggagggtggtaccggcgtaaagctg 43163766  T
Q  110 aatgaaggtgcttggtctatggtgagtgaagtgtttannnnnnnccaatcaattgagttataaggtgtccatgttctgtcataaacatcatctggatatc 209  Q
    |||||||||||||||||||||||||||||||||| ||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43163765 aatgaaggtgcttggtctatggtgagtgaagtgtctatttttttccaatcaattgagttataaggtgtccatgttctgtcataaacatcatctggatatc 43163666  T
Q  210 tttggaaaaggaaaaagtgtaagtacttgtgaaactgtttggagagtttatagaaacagtttattacatttccacaagatgtttttaacttttaccataa 309  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43163665 tttggaaaaggaaaaagtgtaagtacttgtgaaacagtttggagagtttatagaaacagtttattacatttccacaagatgtttttaacttttaccataa 43163566  T
Q  310 gatctttatagctt--nnnnnnncaacatataactaataagatctttattatagcttttgttatagaaatagattatacatagcacttatatgataagcg 407  Q
    ||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43163565 gatctttatagcttaaaaaaaactaacatataactaataagatctttattatagcttttgttatagaaatagattatacatagcacttatatgataagcg 43163466  T
Q  408 tttattgcttattaagcattttatccaagaaggccttatnnnnnnnncnnnnnnnnctccttttaggagtggttccaattctaacttccatggaatgact 507  Q
    |||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||||||||||||||||||||||||||||    
T  43163465 tttattgcttattaagcattttatccaagaaggccttataaaaaataactttttttttccttttaggagtggttccaattctaacttccatggaatgact 43163366  T
Q  508 tgttatagttatactataagtgagatggctcacctga 544  Q
    |||||||||||||||||||||||||||||||||||||    
T  43163365 tgttatagttatactataagtgagatggctcacctga 43163329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 10 - 242
Target Start/End: Complemental strand, 43173541 - 43173306
Alignment:
Q  10 attatacttgggaaggaaggaaaattccatgttgtcactggcatttgctggaattgatgttgttcgcatcacattggagggtggtaccggcgtaaagctg 109  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||| ||| ||||||||||| ||     |||| ||    
T  43173541 attatacttgggaaggaaggaatattccatgttgtcactggcatttgctggaattgctgttgttctcatgacagtggagggtggtgccattaaaaagttg 43173442  T
Q  110 aatgaaggtgct---tggtctatggtgagtgaagtgtttannnnnnnccaatcaattgagttataaggtgtccatgttctgtcataaacatcatctggat 206  Q
    |||| |||||||   ||||| ||||||||||||| ||  |       |||||||||||| ||||||| |||||||||||||||||||| |||||||||||    
T  43173441 aatggaggtgctctttggtccatggtgagtgaagagtcgattttttcccaatcaattgaattataagatgtccatgttctgtcataaatatcatctggat 43173342  T
Q  207 atctttggaaaaggaaaaagtgtaagtacttgtgaa 242  Q
    ||||||||||||||||||||||||||||||||||||    
T  43173341 atctttggaaaaggaaaaagtgtaagtacttgtgaa 43173306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 351 - 412
Target Start/End: Original strand, 33197331 - 33197393
Alignment:
Q  351 ctttattatagcttttgttatagaaatagattatacata-gcacttatatgataagcgtttat 412  Q
    ||||||| || |||||||||||||||||| ||||| ||| |||||||||||||||||||||||    
T  33197331 ctttattctatcttttgttatagaaatagcttatagataagcacttatatgataagcgtttat 33197393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 364 - 404
Target Start/End: Original strand, 33267621 - 33267662
Alignment:
Q  364 tttgttatagaaatagattatacat-agcacttatatgataa 404  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  33267621 tttgttatagaaatagattatacataagcacttatatgataa 33267662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 407
Target Start/End: Complemental strand, 32694189 - 32694134
Alignment:
Q  352 tttattatagcttttgttatagaaatagattatacatagcacttatatgataagcg 407  Q
    |||||| || |||||| ||||||||||| |||||||||  ||||||||||||||||    
T  32694189 tttattttatcttttgatatagaaatagcttatacataatacttatatgataagcg 32694134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 362 - 404
Target Start/End: Original strand, 33087701 - 33087743
Alignment:
Q  362 cttttgttatagaaatagattatacatagcacttatatgataa 404  Q
    |||||||||||||||||| ||||| ||| ||||||||||||||    
T  33087701 cttttgttatagaaatagcttatatataacacttatatgataa 33087743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 404
Target Start/End: Original strand, 11393459 - 11393512
Alignment:
Q  352 tttattatagcttttgttatagaaatagattatacat-agcacttatatgataa 404  Q
    ||||||||| |||||| ||||||||||| ||||| || ||||||||||||||||    
T  11393459 tttattatatcttttgatatagaaatagcttatagataagcacttatatgataa 11393512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 404
Target Start/End: Original strand, 11410120 - 11410173
Alignment:
Q  352 tttattatagcttttgttatagaaatagattatacat-agcacttatatgataa 404  Q
    ||||||||| |||||| ||||||||||| ||||| || ||||||||||||||||    
T  11410120 tttattatatcttttgatatagaaatagcttatagataagcacttatatgataa 11410173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 389
Target Start/End: Original strand, 26522717 - 26522754
Alignment:
Q  352 tttattatagcttttgttatagaaatagattatacata 389  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  26522717 tttattatatcttttgttatagaaatagtttatacata 26522754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 544
Target Start/End: Complemental strand, 43173105 - 43173068
Alignment:
Q  507 ttgttatagttatactataagtgagatggctcacctga 544  Q
    ||||||||||||||||||| || |||||||||||||||    
T  43173105 ttgttatagttatactatatgtaagatggctcacctga 43173068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 349 - 389
Target Start/End: Complemental strand, 5133752 - 5133712
Alignment:
Q  349 atctttattatagcttttgttatagaaatagattatacata 389  Q
    ||||||||| || |||||||||||||||||| |||||||||    
T  5133752 atctttattttatcttttgttatagaaatagcttatacata 5133712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 406
Target Start/End: Complemental strand, 14482180 - 14482124
Alignment:
Q  351 ctttattatagcttttgttatagaaatagattatacat-agcacttatatgataagc 406  Q
    ||||||| || |||||||||||||||||| |||||||| ||||||||||||||||||    
T  14482180 ctttattttatcttttgttatagaaatagtttatacataagcacttatatgataagc 14482124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 406
Target Start/End: Original strand, 39392753 - 39392809
Alignment:
Q  351 ctttattatagcttttgttatagaaatagattatacatag-cacttatatgataagc 406  Q
    ||||||| || |||||||||||||||||| |||||||||| ||||||||||||||||    
T  39392753 ctttattttatcttttgttatagaaatagtttatacatagccacttatatgataagc 39392809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 406
Target Start/End: Original strand, 8536152 - 8536196
Alignment:
Q  363 ttttgttatagaaatagattatacat-agcacttatatgataagc 406  Q
    ||||||||||||||||| |||||||| ||||||||||||| ||||    
T  8536152 ttttgttatagaaatagcttatacataagcacttatatgacaagc 8536196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 406
Target Start/End: Complemental strand, 24975882 - 24975826
Alignment:
Q  351 ctttattatagcttttgttatagaaatagattatacat-agcacttatatgataagc 406  Q
    ||||||| || |||||||||||||| |||||||||||| ||||||||||||||||||    
T  24975882 ctttattttatcttttgttatagaagtagattatacatcagcacttatatgataagc 24975826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 363 - 412
Target Start/End: Complemental strand, 45078259 - 45078209
Alignment:
Q  363 ttttgttatagaaatagattatacata-gcacttatatgataagcgtttat 412  Q
    |||||||||| |||||| ||||||||| ||||||||||||||| |||||||    
T  45078259 ttttgttataaaaatagcttatacataagcacttatatgataaacgtttat 45078209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 388
Target Start/End: Complemental strand, 1418409 - 1418372
Alignment:
Q  351 ctttattatagcttttgttatagaaatagattatacat 388  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  1418409 ctttattatatcttttgttatagaaataaattatacat 1418372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 351 - 406
Target Start/End: Complemental strand, 5373203 - 5373147
Alignment:
Q  351 ctttattatagcttttgttatagaaatagattatacat-agcacttatatgataagc 406  Q
    ||||||| || ||||||||||||||||||  ||||||| |||||||| |||||||||    
T  5373203 ctttattttatcttttgttatagaaatagcatatacataagcacttacatgataagc 5373147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 362 - 413
Target Start/End: Original strand, 11721329 - 11721381
Alignment:
Q  362 cttttgttatagaaatagattatacatag-cacttatatgataagcgtttatt 413  Q
    |||||||||||||||||| ||||| | |  |||||||||||||||||||||||    
T  11721329 cttttgttatagaaatagtttataaagaaacacttatatgataagcgtttatt 11721381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 412
Target Start/End: Original strand, 1166 - 1228
Alignment:
Q  351 ctttattatagcttttgttatagaaatagattatacat-agcacttatatgataagcgtttat 412  Q
    ||||||| || |||||||||||||||||| |||||||| |||||||||||||||  |||||||    
T  1166 ctttattttatcttttgttatagaaatagcttatacataagcacttatatgatagacgtttat 1228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 412
Target Start/End: Complemental strand, 2809 - 2747
Alignment:
Q  351 ctttattatagcttttgttatagaaatagattatacat-agcacttatatgataagcgtttat 412  Q
    ||||||| || |||||||||||||||||| |||||||| |||||||||||||||  |||||||    
T  2809 ctttattttatcttttgttatagaaatagcttatacataagcacttatatgatagacgtttat 2747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 294
Target Start/End: Complemental strand, 32976093 - 32976027
Alignment:
Q  229 taagtacttgtgaaactgtttgga-gagtttatagaaacagtttattacatttccacaagatgtttt 294  Q
    ||||||||||||| |||||||||| ||| |||||||||||| |||| ||||||||| ||| ||||||    
T  32976093 taagtacttgtgagactgtttggaagagcttatagaaacagcttatgacatttccataagctgtttt 32976027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 351 - 412
Target Start/End: Complemental strand, 2514680 - 2514618
Alignment:
Q  351 ctttattatagcttttgttatagaaatagattatacat-agcacttatatgataagcgtttat 412  Q
    ||||||| || ||||| |||||||||||| |||||||| |||||||| ||||||||| |||||    
T  2514680 ctttattttatcttttattatagaaatagcttatacataagcacttacatgataagcatttat 2514618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 363 - 404
Target Start/End: Original strand, 31668789 - 31668831
Alignment:
Q  363 ttttgttatagaaatagattatacat-agcacttatatgataa 404  Q
    ||||||||||||||||| |||||||| ||||||||||||||||    
T  31668789 ttttgttatagaaatagcttatacataagcacttatatgataa 31668831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 410
Target Start/End: Original strand, 3169348 - 3169397
Alignment:
Q  362 cttttgttatagaaatagattatacat-agcacttatatgataagcgttt 410  Q
    |||||||||||||||||| ||| |||| ||||||||||||||||| ||||    
T  3169348 cttttgttatagaaataggttacacataagcacttatatgataagtgttt 3169397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 411
Target Start/End: Complemental strand, 29249440 - 29249391
Alignment:
Q  363 ttttgttatagaaatagattatacata-gcacttatatgataagcgttta 411  Q
    ||||||||||||||||| | ||||||| ||||||||||||||||| ||||    
T  29249440 ttttgttatagaaatagctgatacataagcacttatatgataagcattta 29249391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 351 - 403
Target Start/End: Original strand, 29958002 - 29958054
Alignment:
Q  351 ctttattatagcttttgttatagaaatagattatacatagcacttatatgata 403  Q
    ||||||| || ||||||||||| ||||||  ||||||||||||||| ||||||    
T  29958002 ctttattttaccttttgttataaaaatagcatatacatagcacttagatgata 29958054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 405
Target Start/End: Original strand, 12407753 - 12407807
Alignment:
Q  351 ctttattatagcttttgttatagaaatagattatacatagcacttatatgataag 405  Q
    ||||||| || |||||||||||||||||| ||||||||| ||||| |||||||||    
T  12407753 ctttattttatcttttgttatagaaatagcttatacataacacttgtatgataag 12407807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 352 - 412
Target Start/End: Complemental strand, 26516275 - 26516214
Alignment:
Q  352 tttattatagcttttgttatagaaatagattatacata-gcacttatatgataagcgtttat 412  Q
    |||||| || |||||||| ||||||||| ||||||||| |||||||||||||||||| ||||    
T  26516275 tttattttatcttttgttttagaaatagcttatacataagcacttatatgataagcgcttat 26516214  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 406
Target Start/End: Original strand, 20982227 - 20982283
Alignment:
Q  351 ctttattatagcttttgttatagaaatagattatacat-agcacttatatgataagc 406  Q
    ||||||| || | |||||||||||||||| |||||||| ||||||||||||||||||    
T  20982227 ctttattttatcctttgttatagaaatagcttatacataagcacttatatgataagc 20982283  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 351 - 412
Target Start/End: Original strand, 37063166 - 37063228
Alignment:
Q  351 ctttattatagcttttgttatagaaatagattatacat-agcacttatatgataagcgtttat 412  Q
    ||||||| || |||||||||||||||||| |||||||| |||| |||||||| |||| |||||    
T  37063166 ctttattttatcttttgttatagaaatagtttatacataagcatttatatgacaagcatttat 37063228  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 404
Target Start/End: Complemental strand, 13224406 - 13224353
Alignment:
Q  352 tttattatagcttttgttatagaaatagattatacat-agcacttatatgataa 404  Q
    |||||| || |||||||||||||||||| |||||||| ||||||| ||||||||    
T  13224406 tttattttatcttttgttatagaaatagcttatacataagcacttctatgataa 13224353  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 407
Target Start/End: Original strand, 35095875 - 35095932
Alignment:
Q  351 ctttattatagcttttgttatagaaatagattatacat-agcacttatatgataagcg 407  Q
    ||||||| || |||||||||||||||||| ||| | || |||||||||||||||||||    
T  35095875 ctttattttatcttttgttatagaaatagtttaaatataagcacttatatgataagcg 35095932  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 351 - 402
Target Start/End: Original strand, 7096219 - 7096271
Alignment:
Q  351 ctttattatagcttttgttatagaaatagattatacat-agcacttatatgat 402  Q
    ||||||| || |||||||||||||||||| |||||||| ||||||| ||||||    
T  7096219 ctttattttatcttttgttatagaaatagcttatacataagcacttgtatgat 7096271  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 353 - 412
Target Start/End: Complemental strand, 10391329 - 10391269
Alignment:
Q  353 ttattatagcttttgttatagaaatagattatacata-gcacttatatgataagcgtttat 412  Q
    ||||| || ||||||||||| |||||| |||||| || |||||||||||||||| ||||||    
T  10391329 ttattttatcttttgttataaaaatagcttatacgtaagcacttatatgataagtgtttat 10391269  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 406
Target Start/End: Complemental strand, 11684389 - 11684345
Alignment:
Q  363 ttttgttatagaaatagattatacat-agcacttatatgataagc 406  Q
    |||||||||| |||||| |||||||| ||||||||||||||||||    
T  11684389 ttttgttataaaaatagcttatacattagcacttatatgataagc 11684345  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 404
Target Start/End: Complemental strand, 36734871 - 36734817
Alignment:
Q  351 ctttattatagcttttgttatagaaatagattatacat-agcacttatatgataa 404  Q
    ||||||| || ||||||||||||||| ||||||||||| ||||||||||||||||    
T  36734871 ctttattttaccttttgttatagaaagagattatacataagcacttatatgataa 36734817  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 351 - 407
Target Start/End: Complemental strand, 19422396 - 19422339
Alignment:
Q  351 ctttattatagcttttgttatagaaatagattatacat-agcacttatatgataagcg 407  Q
    |||||||||| |||||||||||||||||  |||||||| |||| ||||||||||||||    
T  19422396 ctttattatatcttttgttatagaaataacttatacataagcatttatatgataagcg 19422339  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 404
Target Start/End: Complemental strand, 4191706 - 4191663
Alignment:
Q  362 cttttgttatagaaatagattatacat-agcacttatatgataa 404  Q
    |||||||||||||||||| |||||||| ||||||||||||||||    
T  4191706 cttttgttatagaaatagcttatacataagcacttatatgataa 4191663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 363 - 404
Target Start/End: Original strand, 2980575 - 2980617
Alignment:
Q  363 ttttgttatagaaatagattatacat-agcacttatatgataa 404  Q
    ||||||||||||||||| |||||||| ||||||||||||||||    
T  2980575 ttttgttatagaaatagcttatacataagcacttatatgataa 2980617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 351 - 410
Target Start/End: Complemental strand, 32724097 - 32724037
Alignment:
Q  351 ctttattatagcttttgttatagaaatagattatacat-agcacttatatgataagcgttt 410  Q
    ||||||| || ||||||| |||||||||||||| |||| |||||| |||||| ||||||||    
T  32724097 ctttattttatcttttgtaatagaaatagattagacataagcactgatatgagaagcgttt 32724037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 362 - 405
Target Start/End: Complemental strand, 41050663 - 41050619
Alignment:
Q  362 cttttgttatagaaatagattataca-tagcacttatatgataag 405  Q
    |||||||||||||||||| ||||||| || |||||||||||||||    
T  41050663 cttttgttatagaaatagtttatacattaacacttatatgataag 41050619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 362 - 401
Target Start/End: Complemental strand, 47970285 - 47970245
Alignment:
Q  362 cttttgttatagaaatagattatacat-agcacttatatga 401  Q
    |||||||||||||||||| |||||||| |||||||||||||    
T  47970285 cttttgttatagaaatagcttatacataagcacttatatga 47970245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 411
Target Start/End: Original strand, 41028954 - 41029004
Alignment:
Q  362 cttttgttatagaaatagattatacat-agcacttatatgataagcgttta 411  Q
    |||||||||||||||||| |||||||| |||||||||||||||||| ||||    
T  41028954 cttttgttatagaaatagcttatacataagcacttatatgataagcattta 41029004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 363 - 407
Target Start/End: Original strand, 34759631 - 34759675
Alignment:
Q  363 ttttgttatagaaatagattatacatagcacttatatgataagcg 407  Q
    ||||| ||||||||||| |||||||||  ||||||||||||||||    
T  34759631 ttttgatatagaaatagcttatacataagacttatatgataagcg 34759675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 351 - 406
Target Start/End: Original strand, 44374736 - 44374792
Alignment:
Q  351 ctttattatagcttttgttatagaaatagattatacata-gcacttatatgataagc 406  Q
    ||||||| || ||||||||| ||| |||| ||||||||| |||||||||||||||||    
T  44374736 ctttattttatcttttgttaaagatatagcttatacataagcacttatatgataagc 44374792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 405
Target Start/End: Original strand, 6741 - 6784
Alignment:
Q  363 ttttgttatagaaatagattatacat-agcacttatatgataag 405  Q
    ||||||||||||||||| |||||||| |||||||||||||||||    
T  6741 ttttgttatagaaatagtttatacataagcacttatatgataag 6784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 405
Target Start/End: Original strand, 116660 - 116703
Alignment:
Q  363 ttttgttatagaaatagattatacat-agcacttatatgataag 405  Q
    ||||||||||||||||| |||||||| |||||||||||||||||    
T  116660 ttttgttatagaaatagtttatacataagcacttatatgataag 116703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 362 - 407
Target Start/End: Complemental strand, 871012 - 870966
Alignment:
Q  362 cttttgttatagaaatagattatacat-agcacttatatgataagcg 407  Q
    ||||||||||| |||||| |||||||| |||||||||||||||||||    
T  871012 cttttgttataaaaatagtttatacataagcacttatatgataagcg 870966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 362 - 401
Target Start/End: Complemental strand, 13037831 - 13037791
Alignment:
Q  362 cttttgttatagaaatagattatacat-agcacttatatga 401  Q
    |||||||||||||||||| |||||||| |||||||||||||    
T  13037831 cttttgttatagaaatagcttatacataagcacttatatga 13037791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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