View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13975_high_92 (Length: 237)
Name: NF13975_high_92
Description: NF13975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13975_high_92 |
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Alignment Details
Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 125 - 224
Target Start/End: Complemental strand, 35999882 - 35999783
Alignment:
| Q |
125 |
tcaatgaaacatgaattattttcagttacactgttatcaactttggaagtttcaatgtatttctcggcttcgaattcttcaacatttatatcgttcatct |
224 |
Q |
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| T |
35999882 |
tcaacgaaacatgaattattttcagttccactgttatcaactttggaagtttcaatgtatttctcggcttcgaattcttcaacatttatatcgttcatct |
35999783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 36000026 - 35999923
Alignment:
| Q |
20 |
gaatccaactcaaatgtacaaaaccaatttgagcttctatttcttcaagttttctatccttcaannnnnnnatcagattgaggatctaaaaaatccatat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
36000026 |
gaatccaactcaaatgtacaaaaccaatttgagcttctatttcttcaagttttctatccttcaaattttttatcagattgaggatctaaaaaatccatat |
35999927 |
T |
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| Q |
120 |
tgtt |
123 |
Q |
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|||| |
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| T |
35999926 |
tgtt |
35999923 |
T |
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